Polyodon spathula (Mississippi paddlefish): 121320902
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Entry
121320902 CDS
T07273
Symbol
herc3
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3 isoform X1
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121320902 (herc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121320902 (herc3)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121320902 (herc3)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121320902 (herc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
MOV-10_beta-barrel
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
121320902
NCBI-ProteinID:
XP_041115615
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All DBs
Position
1:65029503..65091633
Genome browser
AA seq
1041 aa
AA seq
DB search
MLCWGSTAAGQLGLGDTVSTVSEPRSCEVFNGRGLKDIACGGHHSVFLLSEGSVYTCGSN
SCGQLGHEKGGSRPEVVAALDAQKIVAVSCGKAHTLAVSEQGQVFSWGAGSDGQLGLGTT
EEAVKVPRLIKKLCEHRITQVMCGSQHCIALSRDGQLFTWGQNSNGQLGLGKGEPSKPSP
QPLKSLLGIPLAQIAAGGDHSFAVSLSGAVFGWGRNHAGQLGLNDEQDRAVPCHVKSLRS
QKVVYISCGEEHTAALTKDGGLFTFGAGSHGQLGHDSTNNEFLPRRVLELMGSEVTQIAC
GRQHTLVFVPSSGLVYAFGCNSKGQLGNGCVGIAKSPQPVKGSLVAHKGQLSPLSDKSEQ
YTIRRIHCGGDHNFLMCSKCENSVTPEDFRIIHCTKSISVINNDNLNLWRQKLMENIDSN
AVNDIILLLSSTACWNASFLDQINDGHFKTNPKIPGIDLNSVRLLFKTLMKPPYSRLLEQ
ATKSFESLLIPQLSCSPPDVEAMRIYLILYEFPVLNDSKYYITLTVPLAMAILRLDTNPS
KVLDNWWSSVDSEVFTRLVEMYKRTVVFLLSGGKALLIPVFLDSYINAALKLLEKLHKVN
LKAQHVEYDQFYIPGLTSLVDIQEDYLKWFLNMAENNSVTLCAYPFIFNAPAKTKMLQTD
AELQMQIAVNGANLHNVFMLLTLEPMLARNPFLVLHVRRVSLVSDTLRELSICSDVDLKK
PLKVIFDGEEAVDAGGLTKEFFLLLLKELLDPVYGMFTQYKESNLLWFSDKCFVEHNWFH
LIGIICGLAIYNSTVVDLHFPLALYKKLLGVQPTLVDLKELSPTEGRSLQQLLDYPGDNV
EETFCLNFAIARENYGLTEIKELVPGGDNITVKKSNRQEFVEAYLNYVFNQSIEELYLAF
SSGFLKVCGGKVLSLFQPSELMAMVVGNNNYNWEEMEKNAVYKGEYSASHPTVKIFWEVF
HGFELEKKKQFLLFLTGSDRIPIYGMESLRIVIQSTSAGEQYLPVAHTCYNLLDLPKYQT
KEILRRRLTQAIEQYEGFSLV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggtagcacggctgctggccagcttggattaggagacacagttagcact
gtttccgagccgaggagctgcgaagtgttcaatggaagggggctgaaggatattgcctgc
gggggacaccactctgttttcctgttaagtgaagggagcgtctatacatgtggctctaac
agctgcggtcagctgggacacgagaagggaggcagtagaccagaggtggtagcagcgctg
gatgcccagaagattgttgcagtatcctgtggaaaggctcatactctggctgtaagcgaa
cagggccaggtcttctcctggggagcgggaagtgatggccagcttggtcttggcacaact
gaagaagctgttaaagtaccaaggttgattaagaagttgtgtgaacacagaataactcaa
gtaatgtgtggcagccaacactgcatagctctctcaagagacgggcagctcttcacttgg
ggacagaattcaaatggacagcttggcctggggaaaggggagccaagtaaaccatccccc
cagcctctgaagtctctgttggggatcccgttggctcagattgctgcagggggagaccac
agctttgctgtctcgctatcaggggctgtttttggctgggggagaaaccatgcaggacag
ttaggactcaatgatgaacaagatcgggctgttccttgccatgtcaagtctttaagatca
cagaaagtagtttacatcagctgtggggaagagcacacagcagccctaacaaaggatgga
ggtctgtttacatttggagctggttcccatggacagctgggacacgactctacaaacaat
gagttcctcccgagacgggtcctcgagctcatgggcagtgaggtcactcagattgcctgc
ggcaggcaacacacactagtgtttgtgccttcctctggtctggtctatgcatttgggtgc
aacagcaaaggacagttgggaaatggctgtgtgggtatcgctaaaagcccacaacctgtt
aaagggtccttggttgcccacaaaggacaactttcaccattgtcagataagtccgaacag
tataccattagaagaattcactgtggtggtgaccataattttttgatgtgttcaaaatgt
gagaattctgttacccctgaagatttccgtattattcattgtacaaagagtatctcagta
ataaacaatgacaatttaaacttgtggagacagaagctgatggagaatattgattccaat
gctgtcaacgatataatccttctgctttcttccactgcatgttggaacgcaagttttctt
gatcaaatcaatgacggccattttaaaaccaaccctaaaatccctgggattgatcttaac
tcggtcaggttgttattcaagacattgatgaagcccccatattctagattactagaacag
gcaacaaagagttttgaaagcctcttgattcctcagctctcctgctctcccccagatgtt
gaggctatgcggatctatctgattctgtatgagttccctgttcttaacgactccaagtat
tatatcacgctaacagttcctttggccatggcaatccttcgtttggacacaaaccctagc
aaagtacttgataactggtggtcttcggtggattctgaagtttttactcgacttgtggag
atgtataagcggacagtggtttttctgttgagcggagggaaagctttgttaatccctgtg
tttttagacagttacatcaatgctgcacttaagcttttagagaaactgcacaaggtgaat
ttaaaggctcagcacgttgaatatgaccaattttacatacctggcttaaccagcttggtg
gatattcaggaagactacctgaagtggtttttaaacatggctgaaaataactctgtgaca
ctgtgcgcctacccatttatattcaacgctccagcaaaaaccaaaatgctgcagacagat
gctgagttacagatgcagatagctgtaaatggagctaacctgcacaatgtcttcatgctg
ctgacactggagcctatgctggccagaaacccctttctggtactccatgtgcgcagggtc
agtctggtcagcgacaccctccgtgagctcagcatctgctccgatgttgacctcaagaag
ccgttaaaggtgatttttgatggagaggaagctgtagatgcaggagggcttacgaaggag
ttcttcctcttgcttctcaaagagctgctggacccggtctatggaatgttcacacagtac
aaagaatcaaacctcctctggttttcagacaaatgttttgtagaacacaactggttccac
ttgattggtataatttgtgggttggcgatatacaactccactgtggtggacctgcacttc
cccttggccctctacaagaagctcctgggtgtgcagcccactttggtggacttaaaggaa
ctgtccccaacagagggaaggagtcttcagcagctccttgattacccaggagacaatgta
gaagagaccttctgcctgaattttgcaattgctagagagaactatggactgacagagatt
aaagagctagtgcctggaggagacaacattactgtgaaaaagtcaaacaggcaagaattt
gtggaagcatatcttaactacgtctttaatcagtctattgaggagctgtaccttgcattc
tcaagcggcttcctgaaggtctgtggaggtaaggtcctgtcgctgttccagccttccgag
ctgatggcaatggtcgtggggaacaacaattataactgggaggagatggagaagaatgct
gtatacaaaggtgaatactcagcatcacatcctacagtcaaaatattctgggaagtattc
catgggtttgaactggagaagaaaaagcaattcttgttgttcttgacaggcagtgaccgc
atccccatatatggcatggagagcctgcggatagtcattcagtccacatcagcaggagag
cagtacctgcctgtggctcacacctgctacaacctattagatctgcctaaataccagacc
aaagagattctcaggaggagacttacccaggccattgaacagtatgaaggattcagtctg
gtgtaa
DBGET
integrated database retrieval system
