Polyodon spathula (Mississippi paddlefish): 121320916
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Entry
121320916 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121320916
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121320916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
UBA_N4BP1_C
zf-CCCH_4
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
121320916
NCBI-ProteinID:
XP_041115629
LinkDB
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Position
9:18102720..18134025
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AA seq
904 aa
AA seq
DB search
MSVCFPVNDYRTLYFQEYRNIKSADPGICDNFMGLKDHLDGGIDAIHDLDYLHVESTDQQ
LGATSLWSRIEKPIMDKVNSRKEDGSASSVEDTTCNSSFGDSEESASSDSESEYLNSSTA
TDSSPLTKTHRQLCRSPCMEPSVVIRTEIAQDLKPEESHETPKEDKKPLDVVREYQTKME
FALKLGYSEEHVQLVLSKMGPEALINDILGELVKMGSMSEADQALSGGSGGGCGSSSSST
SACISSSSSTESHHPDSPSQEELSDDTDNLRPIVLDGSNVAMSHGNKEVFSCHGIKLAVD
WFLDRGHKDITVFVPAWRKEQSRPDALITDQEILRKLEREKILVFTPSRRVQGRRVVCYD
DRFIVKLAYESNGIIVSNDNYRDLANEKPEWKKFIDERLLMYSFVTDKFMPPDDPLGRHG
PSLDNFLRKRPIVPEHKKQPCPYGKKCTYGHKCKFYHPERGTQPQRSVADELRAIAKNTA
ANGINEGGLVKSHSMPSSSKSDIKRTAPKRQSDPSIRTPAYHELEEKLSAKIKAETRSVP
SPVIKSSSPHPHSQKHQPSAPTNNGLHPSQRASMIVNKNHGMPVAYNEQYPKCDSPVDMN
YYSMVNAYSNLSISGPRSPDRHFSVDTDYRISSVASDCSSEGSMSCNSSDSYIGYNERSY
MSSPDPLLEENLKCHHHHHPPPPPPPPQNRLHSQPFGHNYYDALARVQSFEHEEPKSHLK
PSIPSLPPHLQHPVVGARSSCPTDYPGPQNHQHSQTRALVSTRIDSHSDSRLYHNSPLRQ
RKPHPGQEHFGSWDSLSYGMDAYGYHQGYSLPSKPTQPCYEQFTFQSLPENRDQSWRMPW
GRSMPQQEPPKPSRYQDIREKVFLNLCNIFPPDVVQMVMNRSPHMMDAQQLAAAILAEKT
QQSY
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgtgctttccagttaatgattataggacactttacttccaagagtaccgaaat
attaaaagtgcggacccaggcatatgcgacaacttcatgggcttgaaagatcatctggac
ggtggaatagatgccatccatgacctggattacctacatgtggagagcacagaccaacag
ctcggtgcaacctcactgtggtctaggatagagaagcccataatggacaaagtaaactcc
aggaaggaagatggctcggcaagctccgtggaggacaccacctgcaacagctcctttggg
gattcagaggagagtgctagttctgacagtgagtccgagtacctcaacagcagcacagca
acggactctagtcccttgacaaaaacccaccggcaactgtgccggtcaccatgcatggag
ccatctgtggttattaggactgagatcgcacaggatctaaagccagaggaaagccacgag
acacccaaagaggacaagaaaccactggacgtagtcagggagtaccagaccaaaatggaa
tttgccctcaagctagggtattctgaggagcatgtccagctcgttctgagcaagatgggc
ccagaggcgttgatcaatgacatcctgggggagctggtgaaaatggggagcatgtctgag
gctgaccaggccttgtcgggtggtagtggtgggggctgtggttcctcatcctcctccact
tcggcttgtatctcatcctcttcctccacagagtcacaccaccccgactcgccttctcaa
gaagagttgtctgacgacacagacaacctgaggcccatagtcctcgatggcagtaatgtg
gccatgagccatggcaacaaggaagtgttttcctgtcacggaattaaactggcagtggac
tggtttttggatcgtggccataaagacatcacagtgtttgtgcccgcctggagaaaagaa
caatctagaccagatgcccttataacagaccaagaaatcttgcggaaactggaaagggag
aagatactggtgttcaccccttcacgacgtgtgcaggggcggagggtggtctgttatgat
gaccggttcatagtcaagctcgcctatgagtcgaacggcatcattgtatccaatgacaac
tacagggatctggccaacgagaagcctgaatggaagaagtttattgatgaacgattgctg
atgtattcctttgttactgacaagttcatgccacctgatgatccactgggtcgccacggc
ccaagcttggataacttcttgagaaaaagacccattgtaccagaacacaaaaaacaacct
tgcccatatggaaaaaagtgcacttacgggcataagtgtaaattttatcacccagagaga
ggtactcagccccagcgctctgtagcggatgagcttcgtgccatagctaaaaacacagcg
gccaatggaataaacgaaggtgggctggtcaagagtcacagcatgccgtcaagctccaaa
tccgacatcaagcgcacagcaccaaagagacagtcagaccccagtatcaggactccagcg
taccacgagctagaagagaagctgagcgccaaaatcaaagcggagacacgctctgttccc
tcgccggttatcaaaagcagttcccctcatcctcattctcagaaacatcagccctctgcc
ccaacaaacaatggccttcatccctctcaaagagcatctatgattgtgaacaaaaaccac
gggatgcccgtggcttacaacgagcagtaccccaaatgtgactccccggttgacatgaac
tactactccatggttaatgcatactccaacctgagcatctcggggcccaggagcccagat
aggcatttttctgtcgacacagattaccggatcagctctgtcgcctcagactgcagcagc
gaaggcagcatgagctgtaacagcagtgactcttacattggatacaacgaacgctcttac
atgagctccccagacccgctgctagaggagaacctcaaatgtcatcaccaccaccaccca
cctcctcctcctcctcctcctcagaatcgccttcattcacagccttttggccacaattat
tatgatgccttagcccgagttcaaagttttgagcatgaggagccgaaatctcatcttaag
ccatccattccctccctcccccctcacctacaacacccagtggtgggggcccgctctagt
tgcccaaccgactaccctggaccacagaatcaccagcactcccagaccagagccttggtt
tcgactcggattgacagccactctgactcgcgactttaccacaactccccactgcggcaa
aggaagccccatcctggccaggagcactttgggagttgggacagcctgagttatgggatg
gatgcttatggctaccaccaaggctactctttacccagtaaacccacgcagccttgttac
gagcagttcacattccaaagcttgcctgagaaccgggatcagtcctggaggatgccctgg
ggacgcagcatgcctcagcaggagcccccaaagccttcaagatatcaggatatccgggag
aaggtctttctaaacctttgcaatatcttcccacccgacgtggtgcagatggtaatgaat
aggagtcctcacatgatggatgctcagcagctggctgctgcaattctagcagaaaagacc
caacaaagttactga
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