Polyodon spathula (Mississippi paddlefish): 121320950
Help
Entry
121320950 CDS
T07273
Name
(RefSeq) protocadherin-17-like isoform X1
KO
K16499
protocadherin delta 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121320950
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Protocadherins
121320950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
121320950
NCBI-ProteinID:
XP_041115720
LinkDB
All DBs
Position
9:complement(47102647..47150161)
Genome browser
AA seq
1126 aa
AA seq
DB search
MYLSIFFFLLLWARALTLKTLNYSVPEEQGPGTVIGNIAKDARLASGERNRKSNFRVLEN
SAPHLLDVDPESGLLYTKQRIDRETLCRRNPKCQLSLEVFANDKEICMIKVEIQDINDNS
PSFPSEQIDIDISENAAPGTRFPIASAHDADSGENGLKTYQITRDDYNIFSLDVKARGDG
TKFPELVVQRPLDREEQSHHTLVLTALDGGEHPRSGTVQINVKVIDSNDNSPLFDQPSYI
VEIPENAPSGTVVIDLNATDPDEGTNGQVVYSFSGYAPDRIRELFSIDSKTGVIMVQGEI
DYEDSGIIEIDVQAKDLGPNPIPAHCKVTVKVIDKNDNWPSIGFVSVRQGSISESAPTGT
VIALVRVTDKDSGRNGQLQCRVLGNVPFKLEENYDNFYTVITDRPLDREVQDEYNVTIVA
KDNGIPPLNSTKSFSVKILDENDNAPRFTKPVYLLQVPENNIPGEYLGSVLAHDPDLGQN
GTVSYSILPSHVGDVSIYTYVSVNPTNGAIYALRSFNYEQTKFFEFKVLAKDSGSPHLES
NATVRVSVLDVNDNAPVIVLPLLQNDTAEIHVPRNVGVGYILTTVRAVDNDYGESGRLTY
EITDGNEEHLFEMDSVTGEVRTVHPFWEEVTPVAELIIKVTDHGKPKLSAVSKLIIKAYT
GSLPEGEPRINEEHRHWDMSLPLIVTLSIVSIILLAAMITIAVKCKRENKEIRTYNCRIA
EYSHPQLGKSKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTRLPLS
SPRSEVMYLKPTSNNLTVPQGHAACHTSFTGPVTSTTETPVNRMSIIQTDNFPAEPNYMG
SRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKMKSTTVKP
QPLQQEQEECVNCTDECRVLGHSDRCWMPQFPTANQAENADYRTNLFVPAGAEVNVETES
YETVNTNGKKTFCTFGKEKRDHTILVANVKPYLKAKRALSPLLQEIPSASNSPSKTCIPA
CTSTRGLIEGCEVKPGNFAESSAHYLSTNNKLKDSPYPPSDPMAKVLGDVHSRVSRDSSE
MDCVLEQLDQANPELGREALDAEQVVREIDKLLQDCRGSEATSVRK
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttctattttctttttcctgctgctctgggctcgagccctgacactgaaaacc
ctgaattattctgtcccagaggaacaagggcccgggaccgtgattgggaacattgccaaa
gatgccaggcttgcatctggagagcgaaacaggaaatctaactttcgggttttagaaaat
tcagccccacatctgctggacgtggatcctgaaagcggactgctgtatactaagcagcgg
atcgatagggaaacactgtgtaggcgaaaccccaagtgtcagctctcattggaagtgttt
gccaacgataaagagatctgcatgattaaagtggaaatccaggatataaacgataattcg
cccagtttcccttcagaacagatcgatattgacatttctgagaacgcagcaccggggaca
cgcttcccaattgccagcgcacacgacgccgactcgggggaaaacgggttaaaaacgtat
cagatcacccgagacgattataatatattttcattggacgtaaaagccagaggagacggg
actaaattccctgaattagtggttcagagacctttagacagggaggaacagagccatcac
acacttgtgttaacagcattggatggtggggaacatcccagatcagggactgtgcaaata
aatgttaaagttattgattctaatgacaatagtccattgtttgaccagccctcttatatt
gtagaaatacctgaaaatgccccttccggcactgtagtgatagatttaaatgctacagac
ccagatgaaggcaccaatggacaggtagtctattcttttagtggttatgcaccagatagg
atccgagagcttttctctattgactctaaaacaggtgttataatggttcagggggaaata
gactatgaggacagtgggattattgagattgatgtccaggctaaggatttaggacccaac
cccattcctgcccactgtaaagtaactgtcaaagtaattgataaaaatgacaattggccc
tccattggttttgtttctgtccgccaagggtccatcagtgagtctgcgcccacaggcact
gttattgccctggtaagggttactgataaggattcagggagaaacggacagctccagtgc
agagtgctgggcaatgtgcctttcaaactggaagaaaactatgataatttttacactgta
attactgatagacctttagacagagaggttcaggacgaatacaatgtgacgatagtagcc
aaagacaatggaatccctcccctcaattcaaccaaatctttttcagttaaaatcttagat
gaaaatgacaatgcaccgcgttttaccaaaccagtttaccttctgcaggtgcctgagaat
aacatcccaggggagtatttggggtcagttttggcacatgatccagatttgggtcagaat
ggcactgtatcttattctattttgccatcgcatgtaggagacgtgtccatctacacatac
gtgtctgtgaaccccacaaacggagccatttatgctctacgatcctttaactatgagcaa
accaagttttttgagtttaaagtcctagcaaaggattcaggatctcctcatttggaaagc
aatgcaacggtacgggttagtgttttagatgtaaatgataatgccccagttattgtctta
cctctcctacaaaatgacactgctgaaattcatgtcccccgaaatgttggggtaggatac
attctaaccacagtaagggcagttgacaatgactatggagaaagtggccggctaacttat
gagattacagatgggaatgaagagcacttgtttgagatggactctgtcactggtgaggtg
agaacagtgcaccctttctgggaagaagttaccccagttgcagagctaataataaaggtg
acagaccatggaaaaccaaaactttctgcggtgtcaaagctgataatcaaggcttacact
ggctctctgcctgaaggggagcccagaataaacgaggagcatcgtcattgggacatgtct
ttgcctttgattgtcactttgagcattgtctccatcatcctccttgcagccatgatcacc
atagctgtaaaatgcaagagagaaaacaaagagatcagaacttacaactgccggattgcc
gagtattctcatccacagctaggcaagagcaagaagaaaaagattaataagaacgacatc
atgctggtgcaaagcgaggttgaagagagggatgccatgaatgtgatgaatgtggttagc
agcccctcccttgccacttcccccatgtattttgattaccagactagattgcccctgagt
tcccccaggtcagaggttatgtacctgaaacccacctctaacaacctgactgttcctcaa
ggacatgctgcgtgtcacaccagcttcacagggccggtgacaagtacaacggagacacca
gttaacaggatgtcaataattcagacagacaattttcccgcagagcccaattacatgggc
agcaggcagcagtttgttcaaagcagctccacattcaaggaccctgaacgtgcaagcctt
agagacagtgggcatggagacagtgaccaggctgacagtgaccaggacaccaataaaggc
tcctgctgtgacatgtcagccaaggaggccctcaagatgaaatcaactacagttaaaccc
cagcctctccagcaagagcaagaagagtgcgttaattgcacggatgagtgtcgagtacta
ggacactctgacaggtgctggatgccacagttccccacagctaaccaggcagagaacgca
gattatcgcacaaacctctttgtaccagcaggtgctgaagtgaacgtcgagactgagagt
tatgaaaccgtgaacaccaatggaaaaaaaacattctgcactttcggaaaagagaaaaga
gatcacaccattcttgttgccaatgtcaaaccttacttgaaagccaagcgtgctctgagc
cccttattgcaagaaattccctcagcttcaaacagccccagcaagacatgtatcccagca
tgcacatccacaagaggactgatagaaggctgtgaagtgaaacctggcaactttgcagaa
tcaagcgcccattacctgtcaaccaataataagctgaaagactccccataccctccatca
gatccgatggctaaagtccttggcgatgtgcattctcgagtgagtcgagactccagtgag
atggactgtgtgctggagcaattggaccaggccaacccagagttaggcagagaggccttg
gatgctgaacaggttgtacgtgaaatcgacaagcttttacaggactgccgcggaagtgaa
gccacatcggtgagaaagtga
DBGET
integrated database retrieval system
