Polyodon spathula (Mississippi paddlefish): 121320993
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Entry
121320993 CDS
T07273
Name
(RefSeq) runt-related transcription factor 1-like isoform X1
KO
K08367
runt-related transcription factor 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121320993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121320993
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
121320993
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Runt
RunxI
TagH_SH3-like
Motif
Other DBs
NCBI-GeneID:
121320993
NCBI-ProteinID:
XP_041115801
LinkDB
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Position
9:complement(49816159..49903865)
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AA seq
479 aa
AA seq
DB search
MASNSIFESFSSFQPCFVRDAAPARRFTPPSTTLSPGKIREGLSLGGQENSSALMGKLRI
TDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVGLGDVPDGTLVTVM
AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAI
KITVDGPREPRQRLTPPPTPLCFRTAGHRQKLEEQGKPGSLAFSERLSELEQLRRTAMRV
SPHHNPRPALNHNAPFTGEPHSQIQDSRQMQASPSWSYEQSYPYLGQISTPAVHPATPIS
PGRASGMASLTELSSRLSAAPDLTAFSDPRMGIERQFPTLPDSRFSDPRMHYPGAFTYTP
TPVTTGIGIGMSAMSSAARYHTYLPPPYPGASSQGQTGAFQTSSPPYHLYYSTSAGSYQF
SMMSGGERSPPRILPPCTNASTGSALLHPNLPNQSEGVEAEGSHSNSPTNVAEAVWRPY
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaacagcatcttcgagtctttttcgtcattccagccttgcttcgtgagggat
gctgcccctgcgcgcaggttcacgccaccgtccaccactctgagccctggcaaaataagg
gaaggcttgtcgctgggggggcaggagaacagctctgccctgatggggaaactgcgcatt
acagaccggagtatggtggaggtgctggcagaccaccctggggagctggtccggaccgac
agcccaaattttctctgctctgtcctgccgacacactggaggtgcaacaagaccctgccc
atagcttttaaggtggttggcctgggcgacgttcccgacggcacgctggtcacggtgatg
gcaggaaatgatgagaattactcggcagagctgcgcaatgccacggcggccatgaagaac
caggtggcccggtttaacgatctgagattcgtggggcgcagcggcagagggaaaagcttc
acactgaccatcacagtgtttaccaacccgccacaagtggccacgtaccacagagccatc
aagatcactgtggatggaccgcgggagccaagacagaggttaacgccgccccccaccccc
ctgtgtttccgcacggcagggcaccgtcagaagctggaggagcaggggaagcccggcagc
ctggcgttctcagagcggctgagcgagctggaacagctgagacgcaccgccatgagggtc
agtccacaccacaacccccgcccagccctcaaccacaacgcccccttcacgggagagccg
cacagccagatacaggattccagacagatgcaggcatccccttcctggtcctatgagcag
tcgtacccgtacctgggtcaaatctccaccccggccgtccaccctgccacccccatctcc
ccgggaagggccagcggcatggcctccctgactgagctctccagcaggctctctgctgct
ccagacctgacagccttcagcgacccccggatgggtatcgagaggcagtttcccaccctg
ccggacagccgcttctcggacccccgcatgcactacccgggagccttcacttacacccct
actcccgtcaccacggggatcgggatcggcatgtcagccatgagcagcgctgctcgctac
cacacctacctgcctcccccctaccccggagcatcctcgcaggggcagactggtgccttc
cagaccagctcgcccccctaccacctctactacagcacttccgctggctcctaccagttc
tccatgatgtccgggggggagcgatccccaccacgcatcctcccgccctgcaccaatgcc
tccaccggctcggcgctgctccaccccaacctccccaaccagagcgaaggggtggaggcc
gaggggagccacagcaactcccccaccaacgtggccgaggcagtgtggcggccttattga
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