Polyodon spathula (Mississippi paddlefish): 121321010
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Entry
121321010 CDS
T07273
Name
(RefSeq) cytoplasmic FMR1-interacting protein 1 homolog
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04810
Regulation of actin cytoskeleton
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121321010
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121321010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121321010
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121321010
Factors involved in mRNA localization
Other mRNA localization factors
121321010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Motif
Other DBs
NCBI-GeneID:
121321010
NCBI-ProteinID:
XP_041115832
LinkDB
All DBs
Position
9:50314533..50369483
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AA seq
1253 aa
AA seq
DB search
MTTTVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLIYQPNFNTNFEDRNAFVTGIARYI
EQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMNFMYFQRNAIDRFCGEVKRLCHTERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHNKITQTLQQQLEVIPGYEELLAD
IVNLCVDYYENKMYLTPTEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLTRIDKFFK
QLQVVPLFGDMQLELSRYIKNSAHFEENKSRWSCTSTGSSPQYNICEQMIQIREDHMRFI
SELARYSNSEVVTGSGRQEAQKTDSEYRKLFDSALQGLQLLSQWSAHVMEVYSWKLVHPT
DKYSNKDCPDNAEEYERATRYNYTTEEKFALVEVMAMIKGLQVLMGRMESVFNHAIRHTI
FSALQDFAQLTLREPLRQAIKKKKNVIQSVLQAIRKTICDWETGREPHNDPALRGEKDPK
GGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTMRSSLEGPTILDMEKFHRESF
FYTHLLNFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIDMSMPWILTDHILDTKEASM
MEYVLYPLDLYNDSAHYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKILAGS
LLLDKRLRAECKNQSANIPWPASNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSL
ELAINRFESEDLTSIMELDGLVEINRMTHKLLSKFLTLDSFDAMFREANHNVSAPYGRIT
LHVFWELNYDFLPNYCYNGSTNRFVRTILPFSQEFQRDKQPNAQPQYLYGSKTLNLAYSS
IYSFYRNFVGPPHFKAICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVRTLMEVMPKIC
RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAMLFCLLMEQCLSQEEVC
DLLHAAPFQNILPRIHVKEGERLDAKMKRLEAKYTPLHLVPLIERLGTPQQIAIAREGDL
LTKERLCCGLSMFEVILTRVRNFLDDDIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCI
PVGAHEFTVEQCFGDGLHWAGCMIIALLGQQRRFDVLDFCYHLLKVQKHDGKDEVIKSVP
LKKMVDRIRKFQVVNDEIFAVLSKYLKSGDGESMPVEHVRCFQPPIHQSLASN
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacggtgactctcgaggacgccttgtccaatgtggacctgctggaggagctg
cctctcccagaccagcagccctgcatcgagccccctccctcctccttgatctaccagccg
aatttcaataccaactttgaagacagaaatgcctttgtcaccggcatcgcccgatacatc
gagcaagcaacagtccactccagcatgaatgaaatgcttgaggaggggcaggagtatgcc
gtgatgctgtacacatggagaagctgctccagagccattccacaggtgaagtgcaatgag
cagccgaatagagtggagatttacgagaagacagtggaggtcctggagcccgaggtcact
aaactcatgaacttcatgtactttcagcgcaatgccattgaccggttctgtggagaggtg
aagaggctgtgtcacacggagagaaggaaggactttgtctctgaggcctacctcctgacc
ctgggcaagttcattaacatgtttgcagtgctggacgagctcaaaaacatgaagtgcagc
gtcaagaacgaccattcggcctacaagagagctgctcagttccttcggaagatggctgac
ccccagtccattcaggagtcccagaatctttcaatgttcctcgctaaccacaataaaatc
acccagaccttacagcagcagctggaggttatccctgggtatgaagagctcctggctgat
attgtgaacctgtgtgtggattactatgagaataagatgtatctcactcccaccgagaaa
cacatgctgctgaaagtaatgggttttggtttgtatctgatggacgggtcggtgagcaac
atctacaaactggatgctaagaagcggattaacctgacccgcattgacaagttttttaag
caactgcaggtggttccattgtttggtgatatgcagcttgagctgtcgcgatacatcaag
aacagtgcacatttcgaggagaacaagtccagatggtcatgcacctccactggcagcagc
cctcagtataacatctgtgagcagatgatccagatccgagaagaccacatgcgcttcatc
tccgagctcgcccgatacagcaacagtgaggttgttactggctcaggaaggcaggaggcc
cagaagactgactctgagtatcggaagctgtttgactctgctctgcaggggctgcagctc
ctgtctcagtggagtgcccatgtcatggaagtgtactcatggaagctggtgcatcccaca
gacaagtactccaataaagactgcccagacaatgcagaggagtatgaaagggccacaaga
tacaactacaccaccgaggagaagttcgctctcgtggaggtgatggccatgatcaaaggt
ctgcaggtcctgatgggcaggatggagagtgtcttcaaccatgctattcggcacaccatc
ttctctgccctccaagacttcgcccaactcaccctgagggaacccctgcgccaggccatc
aagaagaagaagaacgtcattcagagtgttcttcaggctatcaggaagaccatatgtgac
tgggagactggacgggagccccataatgaccccgctctgcgaggagagaaggatcccaag
ggaggcttcgatatcaaagtgccaaggcgggctgtgggaccctccagcacacagctgtac
atggtgaggaccatgctagagtctctcattgctgacaaaagtggttccaagaaaaccatg
cggagcagcctggagggacccaccatcctggatatggagaaattccaccgggaatccttc
ttctacacacacttgttaaatttcagtgaaacgctgcagcagtgctgtgacctgtcccag
ctctggttccgcgagttcttcctggagctgaccatgggcaggaggatccagttccccatc
gacatgtccatgccctggatcctcaccgaccacattctggacaccaaggaggcctccatg
atggaatacgttctttatcctttggacctttacaacgacagcgcacactacgccctgacg
aaattcaagaagcagttcctatacgatgagatcgaagccgaggtaaatctgtgttttgac
cagtttgtctacaaacttgcagaccaaatctttgcctactacaagattctagctggaagc
cttcttttagacaagcgactgcgcgcagagtgcaaaaaccagtctgctaacatcccatgg
ccagcctccaacagatatgagaccttgctgaagcagaggcatgtgcagctgctgggtaga
tctatagacctgaaccgactgatcacacagcgggtctctgctgccatgtacaagtccctg
gagctggcaatcaaccgcttcgagagcgaggacctcacctccatcatggagctggatgga
ttagttgaaatcaatcgcatgactcacaaactgctcagtaaattcctgactctggacagt
tttgatgccatgttcagagaggcaaatcacaacgtgtcggcgccctatggaagaatcaca
cttcatgtcttctgggagctcaactatgacttccttccaaactactgctacaacggctcc
accaacaggtttgtgcgcactatcctgcccttctcccaggagtttcagagggataagcag
cccaatgcccagccccagtacctgtacgggtcaaagactctcaatttggcatacagcagc
atttacagcttctacaggaactttgtgggcccgcctcacttcaaggcaatctgcagactc
ctgggataccagggcatcgccgtggtgatggaggagctgcttaaggttgtcaagagtctg
ctacaagggaccattctccagtatgtgaggactctaatggaagtgatgcccaaaatctgc
agactccccaggcatgagtacggctctccaggtatcctggagttcttccatcaccagttg
aaggacatagtggagtatgcagagctgaagaccgtgtgcttccagaacctacgagaagtg
ggcaatgccatgctgttctgcctcctcatggagcagtgcctgtcccaggaggaggtgtgt
gacctgctccacgcagccccgttccagaacatcctgcccaggatccatgtgaaagaaggt
gaacgccttgatgccaaaatgaaacgcctggaagcaaaatacactccgcttcatctggtg
cccctgatagagcgtctgggcaccccacagcaaattgctatcgcaagggagggagacctg
ctgaccaaagagaggctgtgctgtggcctgtccatgtttgaggtgatcttgaccagagtg
cgaaacttcctggatgatgatatctggcgcggccccctgcccagcaatggtgtgatgcac
gtggacgagtgcgtggagttccaccggctgtggagcgccatgcagtttgtgtactgtatc
cctgtgggggcccacgaattcacagtggagcagtgcttcggagatggactgcactgggct
ggctgtatgatcattgccttgctggggcagcagaggcgctttgacgtgctggacttctgc
taccacctgctgaaggttcagaagcacgacggcaaggacgaggtcatcaagagcgtgcct
ctgaagaaaatggtggacaggatccggaagttccaggtggtcaatgacgagatctttgct
gtactaagcaagtatctgaagtctggggatggagagagcatgccggtggagcacgtccgc
tgtttccagccgccgatccatcagtcactcgctagcaattaa
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