Polyodon spathula (Mississippi paddlefish): 121321121
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Entry
121321121 CDS
T07273
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121321121
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121321121
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121321121
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121321121
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Protocadherins
121321121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
LYRIC
LST1
Motif
Other DBs
NCBI-GeneID:
121321121
NCBI-ProteinID:
XP_041115956
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All DBs
Position
9:46628931..46632881
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AA seq
891 aa
AA seq
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MFQRSTSSLRAQGILQGLFILLLFIGPFNCFSSYSQANEIIYTVNEGLPKGTLIGNIGAD
LKLDFSADPPLSFNLASKKISVQYVNLNNTTGELYAAAIEIDREALCPENSDNQACILSF
DILILPQQYFRLVKVKIIVKDVNDNSPRFLASEIQVFVPENAQINSRFAIEHSAVDPDTG
IHGVQTYWLRNDYGLFTLDVEENENGDLTPFLIVIGSLDRESKDEYVTDIIAEDGGTPQH
LGTATLKIIITDVNDNCPVFTESQINVTVYGNAANGAHVTRVHAFDSDLGSNAQISYTYS
ERVPQASKALFNLDTNSGIIKISGIMDGNTAQRHKLTVLANGLGCIPAVTVVTVNIIKVF
FNPPVVVPRYIASVVDGTVYLKESEPSYSPIAFFTIKDLDQKQKVDCHLEGHGPFRLSTY
KTFINEYLLETTETLDYELKQNYELTVVAKNSQGLVVKTIIKVQLIDENDNPPVFKQSLV
DLLLEENNAPNTFLTKLHATDEDSGEKGQVLYILGSDAPSVFTLDKVSGVLMVTTSLDRE
ERDEYRFTVRAVDCGSPLMESIATVIITVLDRNDNSPRFINKDFSFFVPENIPGFGEIGV
ISVSDADSGKNGLVALSIVNGSDIFVIDTGKGVLRVKVPLDREQNSTYLIWIEAVDGGEP
ALSSSTVITVLLLDVNDNPPLVLFPQSNLSYMLVLPTTLPGSSITEVYAVDKDTGMNAVI
AYNIIGRKGPQPESFEIDPDTGNITLQKTLKQNDCGLYRLLVKVSDHGQPEPLHSTVMVN
LYVNETLSNESFIESLLKKEPDITVEQVPPERLAEPAKRKLEQFPCVPVLISLSAACLGL
LLVVILMSACICLRKQKKRKHKEKRLEVDIPLNTNKDFQAKEKKMMEISNI
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgttccagagaagcacctccagccttcgcgcacaaggaatattacaggggttattcatt
cttctgctgttcatcggacctttcaactgcttttcaagttacagccaagccaatgaaatc
atttatacagtaaatgaaggattacccaagggaacactaataggaaacattggagctgat
ttaaagttggatttctctgctgacccccctctttcattcaatctggcgtcaaagaagatc
agtgttcagtatgtgaacctaaataacactacaggggaactgtacgcagctgccatcgaa
attgacagagaagccctttgtccagaaaattctgacaatcaggcttgtatcttatctttt
gacattctcatcctaccacagcaatatttcagattggtgaaagttaaaatcatagtaaaa
gatgtcaatgacaattcacccagatttcttgcttctgagattcaagtttttgttccagaa
aatgcccagatcaactcaagatttgcaatcgagcactctgctgtcgaccctgacactgga
attcatggagtacagacgtattggctgcgtaacgattatggactatttaccttggatgtg
gaagaaaatgaaaatggtgacctaacaccctttttgattgtgataggttcccttgacaga
gaaagcaaggatgaatatgtaactgatataatagcagaggatggaggaactccacagcat
ttaggaacagctaccctgaaaataatcataacagatgtgaatgacaattgtcctgtattt
actgagtcccaaattaatgtaacagtatatggaaatgctgccaatggagcccatgttacc
agagttcacgccttcgattcagatttggggtctaatgcccaaatatcatacacttacagt
gaaagggtgccccaggcctccaaggctttatttaatcttgatactaattcagggatcatt
aaaatcagtggtataatggatggtaacactgctcagcgtcataaactaacagtacttgca
aatggacttggttgtataccagctgtgacagttgtgacagtgaacataataaaagtgttt
ttcaatcctccagtcgtggtaccacgctatatagcttctgtggtagatggcacagtgtat
ttgaaggaatcagagccatcctactcaccaatagcatttttcactataaaggatctagat
caaaagcaaaaggtggattgccacctggaaggtcatggacctttcaggttatcaacttac
aagacatttattaatgaatatttgttagagactacagagactttggactatgagttaaaa
caaaactatgagttgacagtagttgctaagaactcccagggtcttgttgtaaaaaccatc
atcaaggtgcaactaatagatgagaatgataaccctccagtttttaagcagtctttggtt
gatttattactggaagaaaacaacgctcctaatacattcctgacaaaactacatgcgaca
gatgaagacagtggagaaaaaggtcaagtgttgtatattcttgggtctgatgctccttca
gttttcacattggacaaagtttctggagttcttatggttaccacatctctggacagagaa
gaaagggatgagtacagatttacagttagagctgtggattgtggctcaccgctcatggaa
tccatagctactgtaatcatcacagtgctcgacaggaatgataacagcccacgatttatc
aacaaggatttcagcttctttgtaccagagaacatcccaggttttggcgaaattggagtt
atttcggtgagcgatgctgattcaggaaagaatgggttggtcgctctatctattgttaat
ggcagcgacatttttgtcattgacacagggaaaggggtattaagggtcaaagtgcctttg
gatagagaacaaaacagtacttacttgatatggatagaggctgtagatggtggagagcct
gccctctcatctagcactgtgattacggttttgcttttggacgtcaatgacaatccacct
ttggttttgtttcctcagtctaatctgtcgtatatgctggtgctaccaacaactcttcca
ggctcctccataacagaagtatatgccgtagacaaagacacaggaatgaatgcagtgata
gcctacaacatcattggaagaaaggggcctcagcccgagtcatttgaaattgaccctgat
acaggcaacattactttgcagaaaacactgaagcagaatgattgtggcttgtacagacta
ctcgttaaagtcagcgatcatggacaaccagagcctcttcattcaacagttatggttaac
ctatatgtcaatgaaacattaagcaatgagagctttatagaaagtttactgaaaaaagaa
cctgacatcactgtggagcaagtgccaccagaacgattggcagagcctgctaagagaaag
ttagaacagtttccctgtgttcctgtattaatatcactttcggctgcatgtctagggctt
ctgttagtagtgattctaatgtctgcctgcatctgcttaaggaaacagaagaagcgtaaa
cataaagaaaaaagattggaagtagatataccattaaatacaaacaaggatttccaggca
aaagaaaaaaagatgatggagatttccaatatatga
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