Polyodon spathula (Mississippi paddlefish): 121321349
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Entry
121321349 CDS
T07273
Symbol
lrba
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121321349 (lrba)
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Others
Others
121321349 (lrba)
Endosome - Golgi transport
121321349 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
121321349 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Neurobeachin
Laminin_G_3
SUKH_6
Motif
Other DBs
NCBI-GeneID:
121321349
NCBI-ProteinID:
XP_041116186
LinkDB
All DBs
Position
1:complement(67467302..67751188)
Genome browser
AA seq
2846 aa
AA seq
DB search
MASEEKPVPLGLQAGDAGGKDEGTAPLSLNPGIPIRGIKMKFAVLAGLVEVGEVTNRDIV
ETVLNLLVGGQFDLEMNFIIQEVESISCMVELLDKCDKTCQAEVWSIFTAILKKSIHNLQ
ACTEMGLIEQVLKRIDKADSMIAELLVDMLGVLASYSITVRELKLFFSKLQGEKGQWPPH
AVKLLSVLKHMPQKNGPDSFFSFPGKRAAAIALPPIAKWPYQNGFTFHTWLRMDPFNNIH
VDKDKPYLYCFRTSKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKYDFKPQKWYMVTIVH
IYNRWKNSEISCYVNGELASYGEITWLVNTSDTFDKCFLGSSETADANRVFCGQMGAVYL
FSEAISAAQILAIYQLGPGYKGTFKYKAESDLLFPEHHKLLLYEGKLSSCIAFMYNPRAT
DAQLCLESSPKDNPSIFIHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDYL
QHCSDQVDTTVCSTLLAFVMELLKNSVAMQEQVLACKGFLVIGYSLEKSSKVHVTRAVLE
LFLGFARYLSNLQNGVLLLKQLCDHVLFNPAIWIHAPAKVQLQLYTYLSTEFISTVTIYN
AIRRVGTVLQVMHTLKYFYWVVNPLDRSGVTPKGLDGPRPNQKETHSLRAFLLLFVKQLI
MKDYGVKEDELQSILNYLLTIHEDGNLIDVLQLLVALMSEHPGSMVPAFDQRNGIRVIYK
LLASKSEGIRVQALKVLCYFLMHLGTKRKAEVMLGYGLFSLLSERLMLHTNVFTMTTYNV
LFEILTEQICTQVIHKQHPDPDSAVKIQNPQILKVIAALLKNSSQCPESMDVRRVFLSDM
IKLFNNSRDNRRSLLQCSVWQEWMLSLCYINPKNSEEQKITEMVYAIFRILLYHAVKYEW
GGWRVWVDTLSITHSKVTFEQHKESLAQMFRDYQRQGGEASALGNIGLIRTISGVSSDAE
AVNKVEEQMSTSYSPEAVQGQNVEVVTSSETKLKTQDKEHAPLASEPKAEEEKMEEPVVT
DVFTLVTDSSPAAEEKVSTEQVECEKGTDKPMAETVEESVGDPKNLVELTPKDNPVDQTS
SAKTFLEQVTSDASKKLEDKVAGTENMEQKGVSSDVASANEQIKADNENHKDSSLAAEEQ
VTTGKVDDTSQLKDEEKPEDMLTQPKPVSDASGSELHESVEKVHTQAEAEVNDQSIKEVE
EKRDDADQGLAESSTSTATAPTTTATTRTKEIKIARLDVSSVASDTERLELKASTSQEPT
SPSESGQGQQEGSGSGGQGRDSSARSTMFRVPEFRWSHMHQRLLTDLLFSIETDVQMWRS
HSTKTVMDFVNSSENVIFVHNTIHLISQVVDNIIMACGGILPLLSAATSATHELENIEPT
QGLSIEASVTFLQRLISLVDVLIFASSLSFTEIEAEKNISSGGILRQCLRLVCAVAVRNC
LECQQHTRFKPVVENARGQKAMQSLMGTGKSAPGQSPVDLVSGGISPIRDLDRLLQDMDI
NRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERKPSQRSQSVKSTKS
GSDVAASIELDKGGGADFENGSSLRRRDSGIGEEQASIAASEVKAAAGPGTEAVIAGPDA
ISEVLSTLSTEVKKSQDSLEQENKMSSSASAASQGKKVKDILRSLVSMPADEMVVDPALL
PPAFLGAMGDGATDKSVQFRSFDRSVVVAPKKASGAPSLAASTVTAATPVPATAAAAVPV
NNVSVVSTSDSPQSTATEPGAGSANLPSVPTVSPMTQDSASNMSISERLEQTLEKAAPLL
REIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAG
LAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIHKHAEFESQSAQYSAEKRDE
EKMCDHLIRAAKYRDHVTATQLIQKIIHILTDKHGAWGSSAPSRPREFWRLDYWEDDLRR
RRRFVRNPFGSTHPEATLKAAVEHAPEEDVLVKGKQSIRSQALGNQNSESETLLDGDDDT
LSSLEDKELENLTGPISLSTGAQLVAPAVVVKGTLSITASELYFEVDEEEPSFKKIDPKI
LAYTEGLHGKWLFTEIRAVFSRRYLLQNTALEIFMANRTAVMLNFPDQATIKKVVHCLPR
VGVGTNFGLPQTRRISLASPKQLYKASNMTQRWQRREISNFEYLIFLNTISGRTFNDLNQ
YPVFPWVITNYDSEELDLTLPSNFRDLSKPIGALNPKRAAFFCDRFESWEDDHVPKFHYG
THYSTSSFSLMWLLRIEPFTTFFLNLQGGKFDHADRTFSSVSRAWRNCQRDTSDVKELIP
EFYYLPEMFVNSNNYNLGVMDDGTVVSDVELPPWAKTPEEFVRINRLALESEFVSCQLHQ
WIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLSSIADPVLREAVEAQIRSFGQTPCQLL
IEPHPPRSSAMQVYLLLQTPMMFTEQMQQDVIMVLKFPSNSPVAHVAANTQPGLAAPAII
TVTANRLFAVNKWHGLSGHQGSVQDQPYQLPVEIDPLIASNIGTHRRQITDLLDQSIQIH
SQCFVITADNRFILVCGFWDKSFRVYSTDSGKLTQIVFGHRDVVTCLARSESYIGGDCYI
LSGSRDATLLLWYWNGKNNSIGENPSTEFVTPRAVLTGHDCEITCATVCAELGLVISGSK
EGPCLIHSMNGDLLRTLESPVNCVWPRLIQSSTEGHCVVYYEKGLFCVFSVNGKLLGHME
VEENVKAILLSRDGQYLLAGGDGGVLTVWQIHDLKQLFTYPGCDAGIRSMAMSQDQRCII
TGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8541 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgaggagaaaccggttcctcttggactgcaggcaggtgatgcgggtggtaag
gacgaaggaactgctcctctgtccttgaaccccggaattccgattcgggggatcaagatg
aaatttgcagtactggctggtctggtggaagttggggaagtcacgaacagggacatcgtg
gagactgtcttgaatctgcttgtgggtggtcagtttgatctggaaatgaatttcatcatt
caagaagtggaaagtatctcctgtatggtggagctgctggacaagtgtgacaagacttgc
caggctgaggtctggagcatcttcacagccattcttaagaagagcattcacaacctgcaa
gcttgcaccgagatgggacttatcgaacaggtcctcaagaggatcgataaagctgacagt
atgatagcagaactgttggtcgatatgctgggtgtcttggccagctacagtataactgtc
cgtgaacttaagctgttcttcagcaaactacaaggagaaaaagggcaatggcctccacat
gctgtgaagttgctatcggttttaaaacacatgccacagaaaaacggtcctgattctttt
ttcagctttcctggaaagagggctgcggcaatagctctgcctcccattgcaaagtggccc
taccaaaatggcttcacctttcatacctggctgcgaatggaccccttcaataacatccat
gttgataaagataagccttacttgtactgtttccgaacaagtaaaggactggggtactct
gcacattttgttggaggctgtttgattgtgacctcaataaaatccaaagggaaaggattc
caacactgtgtgaagtatgacttcaaaccacagaagtggtacatggtaacaattgtacat
atctacaatcgctggaagaacagtgaaataagttgttacgtgaatggggaacttgcatca
tatggggaaataacctggttggtcaacaccagtgatacttttgacaaatgtttcttgggg
tcctcggagacggctgatgccaaccgtgttttctgtggtcagatgggggctgtctacctc
ttcagcgaagcaatcagtgctgctcagattctagctatttatcagctgggtccgggctac
aagggcactttcaaatacaaggcagagagtgaccttctctttcctgaacatcacaagctg
ctgttgtatgaggggaagctgtctagctgtattgcattcatgtacaatccaagagctaca
gatgcccagctttgccttgagtcttcacccaaggacaacccttctatctttatacactct
ccccatgcccttatgctgcaggatgtgaaggcagttgtaacgcactctgttcagagtgcg
atccattccattggaggagtgcaggtgcttttccccttgtttgcacagctggactatctg
cagcactgctctgaccaagtggacaccaccgtctgttccactctgctagcatttgttatg
gagctgctgaagaactctgttgctatgcaagagcaagtccttgcctgcaagggctttctt
gtgattgggtacagtctggagaagtcttccaaagttcatgtcactcgggctgtgctggag
ttgttcttgggctttgccaggtacttgagtaacctgcagaacggagtgcttttgctcaag
cagctttgcgaccatgttctcttcaatccagccatctggatccatgctccagccaaggtg
cagctgcaactgtacacctacctgtcaactgagttcatcagcactgtgactatctacaat
gcaatccgtagagttgggactgtgctgcaagtaatgcacacactgaaatacttctactgg
gtggtgaatcctctagatcgcagtggagttactccgaaaggcttggatggcccaagacct
aaccagaaagaaacccattctctccgagcgtttctgttgctctttgtaaaacagttaata
atgaaggattacggtgtgaaggaagatgagctgcagagtattctgaactacctgcttaca
attcatgaggatggcaatttaatagatgtgctgcagctgctggttgcgctaatgtctgaa
catccaggctctatggtcccagcctttgatcaacggaatggaatacgagtcatctataag
ctccttgcatcaaaaagtgaagggattcgggtgcaagccctgaaagtgttgtgttacttt
ttaatgcatttagggaccaagaggaaggcagaagtcatgcttgggtatgggttgttttca
ctgctctccgagcggctgatgctccataccaatgtattcacaatgactacgtataatgtc
ctgtttgagatcctcacagaacagatctgtacccaggttatacacaaacaacatcctgac
cctgactccgcagtaaagatacaaaacccgcaaatcctcaaggtgatagcagccctgctg
aagaattcctcccagtgcccagaaagcatggatgtccgcagagtcttcttgtcagacatg
atcaaacttttcaataacagccgggataaccggaggagtttgctgcagtgttcagtgtgg
caggaatggatgctctctctgtgctacatcaaccctaagaactcagaagagcagaagatt
acagaaatggtgtatgccatcttccgaatcctgctctaccacgcagttaaatatgaatgg
ggaggctggcgcgtctgggtggatactctttccatcacccactccaaggttacttttgaa
caacacaaagagagccttgctcagatgttcagagactatcaaagacaagggggtgaagct
tctgctctaggcaacataggcctcatcagaaccatttctggtgtcagcagcgatgcagaa
gctgtgaacaaggtagaagagcagatgagtacctcctattctcccgaagcagttcagggc
cagaatgtggaagtggtaacttcctcagagactaagcttaagactcaagacaaagaacat
gctcccttggcctctgaaccaaaagctgaggaagagaaaatggaagagccagtagttact
gatgtatttactttagtgactgattcatctccggctgcagaagagaaggtttctacagag
caggtggaatgtgagaagggtactgataaacccatggctgaaacagtggaagaatctgtg
ggggatcccaagaacctggtggagcttacacctaaagacaaccctgtagatcaaaccagc
tcagcaaagaccttcttggagcaggttacatcagatgcgtctaagaaactggaggacaaa
gtcgctggaacagagaacatggaacagaaaggagtaagcagtgatgttgcttctgcaaat
gagcaaatcaaggctgataatgaaaatcacaaagactcttccctagctgcagaggagcag
gtcacaacaggcaaagtagatgacacatctcaactcaaagatgaggaaaagcctgaagac
atgttgactcaaccgaaacctgtgtctgatgcctctgggtctgaacttcatgaaagtgtg
gagaaggtacatacacaggcagaggcagaagtgaatgatcagtccattaaggaggtggaa
gagaagagagatgatgcagatcaaggtcttgctgagagctccacctccaccgccaccgcc
cctacaaccactgctaccaccaggaccaaagagatcaagatagcgagactggatgtctca
agtgtggcatctgacactgaaagactggagctgaaagcaagcacaagccaagagccaact
tcaccatcggagtctggtcaaggacaacaagaaggctctggttctggtgggcaggggaga
gattcttcggcaaggtccacaatgttccgcgtccctgaattcaggtggtctcacatgcac
cagcgcttactcaccgatctgctgttctccattgagactgatgtgcaaatgtggaggagt
cattccacaaagacggtgatggattttgttaacagcagcgaaaatgtcatcttcgtgcac
aacactattcatctgatctcacaagtggtagacaacatcatcatggcttgcggtggaatc
ttgcctctgttgtctgcagccacctctgctacgcatgaattagagaacatcgagccaact
cagggtctttccattgaggcttctgtaaccttcctccagagactgattagccttgtagat
gtgctgatttttgctagctctcttagcttcaccgagattgaggcggaaaagaacatctca
tcaggagggattctgagacagtgcctcagattggtgtgtgcagtagctgtaagaaactgt
ttggaatgccagcagcacacccgtttcaagcctgttgtggaaaatgccaggggacaaaaa
gctatgcaaagcttaatgggaactggaaaatcggccccaggacagagcccagtggatctt
gtctcaggtggtatttcacctataagggatcttgatcggttgctacaagacatggatatt
aatcgtctacgtgccgtggtcttcagagatattgaggacagcaagcaggcccagtttcta
gccttggctgtagtgtacttcatttcagtgctcatggtatcgaagtacagggacatcctg
gaacctcagaatgaacggaagccttcacaacgcagccagtcggtgaagagcacaaaaagc
gggagcgatgtggctgcatctatagagctggataagggtggtggtgctgattttgagaat
ggttcttctttacggagaagggattctggtattggagaggagcaggcttccatcgctgcc
agcgaagtgaaagctgcggcagggcctgggactgaggctgtcatcgctgggcccgacgcc
atcagtgaggtgctgtccaccctgtccactgaggtgaagaaatcccaggattccctagag
caggagaacaagatgtcctcttcagcatctgctgccagtcagggcaagaaagtgaaggac
atactgcgcagtctggtcagcatgccagctgatgaaatggtagtcgacccagccctcctt
cctccagcattcttgggagctatgggagatggtgctacagataaatctgtacagttcagg
tcgtttgacaggagtgttgtggtagctccaaagaaggcaagcggagctccgtctttggcg
gctagtacagtaactgctgccacaccagtccctgctactgctgctgctgccgtcccggtt
aataatgtcagcgtggtctccacatcggactcgccccaaagcacagcaacagagccaggt
gccggaagtgcaaatctaccatctgttcccacagtgtccccaatgacacaagattctgct
tcaaatatgagcatttctgaaaggcttgaacagacccttgaaaaggctgcccctctcctg
agggagatctttgtggattttgctcccttcctttcccgtacccttctgggcagccatggg
caggagctgctcatagaaggtacaagtttggtctgcatgaagtccagcagctcggttgtg
gagctggtgatgctgctgtgttctcaggagtggcagaactccattcagaagaacgccggg
ttggcctttattgaactcgtcaacgaggggaggttgctgagccacactatgaaagatcac
ctggtgagggtcgcgaacgaggcagagttcatactcagcagacagagggcagaggatatc
cacaagcatgccgagtttgagtctcagagcgcccagtattcagcagaaaaacgagatgaa
gagaagatgtgtgatcatttgatacgagcagccaaatatcgggaccatgtgacggcaact
cagctgatccagaaaatcatccacatcctcacagacaagcatggagcctgggggagctct
gctccaagtcgtcctcgtgagttctggcgcctcgactactgggaagatgacttgcggcgc
cggcgacgttttgtgcgcaacccctttggatccacacatcccgaagccacactcaaagca
gcagtagaacacgctcccgaggaagatgtcctggtgaaggggaagcagtcgatcagaagc
caggctttggggaatcaaaattctgaaagtgagacacttctggacggcgacgatgacacc
ctctcctccttagaggataaagaattggaaaacttaaccggtccgataagcttgagcact
ggagcccagctggttgctccagctgtagtggttaaagggaccttgtccatcacggcttca
gaactatacttcgaagtagatgaagaagagcccagctttaagaaaatcgatccaaagatt
ctcgcctacactgaaggactccatggaaaatggctcttcacagagattcgggccgtcttc
tcaaggcgctatttgctacagaacactgcgctggaaatattcatggcaaacagaactgct
gtcatgctcaattttccagaccaggctacaataaagaaagttgttcactgcctaccgcgt
gttggagttgggacgaattttggtttaccacagaccaggcgtatcagtttggcaagccct
aaacaactctacaaagcttctaacatgacccagcgctggcaacgcagagagatctcaaac
tttgagtacctcatcttcctcaatacaatatctggacggactttcaacgacttgaatcag
taccccgtgttcccttgggttatcaccaactatgattcggaagagctggatttgacactg
cccagtaatttcagagatttgtccaagcccataggagctctcaatccaaagagagcagcc
ttcttctgtgatcgctttgaatcctgggaggatgaccacgtcccaaagtttcactatggc
acccattattcaacttcaagcttctcactcatgtggctgctgagaatagagcctttcacc
acatttttcctgaacttgcaaggggggaagtttgaccatgcagacaggactttctcatca
gtgtcgagagcatggcgcaactgccagagagacacctccgatgtgaaggaattgattcct
gaattttattatcttccggagatgtttgtcaactctaacaattacaatctgggagtgatg
gatgacgggacagtggtgtctgatgtcgaacttccaccgtgggctaaaaccccagaagag
tttgtccgcataaatagactggcgcttgagagcgagtttgtctcctgccagctacaccag
tggatagatctgattttcggatacaagcagcaaggtccagaggctgtccgtgcactcaat
gtcttttactacctaacatacgaaggagctgttaacctcagctccattgccgatccagtg
ctaagagaggctgttgaagctcagatccgaagttttggacaaaccccttgtcaactgcta
atagagccacatcctccgaggagttctgccatgcaggtgtatctcctcctgcagacccca
atgatgttcactgaacaaatgcagcaggacgtcatcatggtgctcaagtttccgtccaac
tcccccgtggctcacgtggccgcaaacacgcagcctgggctggctgcacccgccatcatc
actgtcaccgccaacagactgtttgctgtgaacaagtggcacgggctcagtggccaccaa
ggctctgtccaggaccagccctaccagctgccagtggaaatcgatcctctgatagccagc
aacatcggcacccacaggaggcaaatcactgaccttttggaccaaagcattcagatccat
tcccagtgttttgtcatcaccgctgacaaccgattcatcctggtctgtggtttctgggat
aagagtttccgtgtctattccactgactcaggtaaactgactcagatagttttcggacac
cgagatgtggtaacgtgcctggccagatccgaatcatacatcggtggagactgctacatt
ctctcggggtcccgagatgccaccctcctactatggtattggaacggcaagaacaatagc
attggagaaaatccaagcactgagttcgtcacacccagagcagttttgacaggacatgac
tgtgagattacctgtgcgactgtgtgtgctgaactgggcctggtcatcagtggctccaaa
gagggtccttgcctgatacattctatgaatggagatctcctgcggaccctggaaagcccg
gtaaactgtgtatggccgagactcatccagtcctccactgaagggcactgcgtggtttac
tatgaaaagggtctcttctgcgttttcagcgtgaacgggaagctgctgggccacatggaa
gtggaggaaaatgtcaaggcaatactgttgagccgtgatggacagtacttgcttgctgga
ggagatggaggagtgctgacagtctggcagattcacgaccttaagcagctattcacatac
cctggatgtgatgctgggatcaggtcaatggccatgtcacaagaccaaaggtgtataatt
actggcatggcctccggaagcatagtactattttacaatgacttcaatcgatggcatcac
gaatatcaaacgagatactga
DBGET
integrated database retrieval system
