Polyodon spathula (Mississippi paddlefish): 121321354
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Entry
121321354 CDS
T07273
Name
(RefSeq) vacuolar protein-sorting-associated protein 36-like
KO
K12190
ESCRT-II complex subunit VPS36
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121321354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121321354
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121321354
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
121321354
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121321354
Exosomal proteins of colorectal cancer cells
121321354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
TssO
Flu_M1_C
Motif
Other DBs
NCBI-GeneID:
121321354
NCBI-ProteinID:
XP_041116189
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All DBs
Position
9:504767..514060
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AA seq
331 aa
AA seq
DB search
MDRFVWSSGLLEINETLVIQQRGVKLYDGEEKGKMDLGTLLLSTHRLLWRDHKNHDCCIA
MPLSQIVLFEEQAGGIGKSAKIVVHLHPAPSNKEPGPYQTSKYSYIKLSFKEHGQIEFSR
RLSEEMTQKRWERMPVSLPINTSTTSQAGRTRAVGIVGIERKLEEKRKEMDKNISEAFED
LSKLMEKAKEMVELSRSIASKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGTH
YHMQLAKQLGEILLAPLEEQGGMMALTEVYCLVNRARGMELLSPEDLVNACKMFEALKLP
LRRATEDPNVAFFCTHTSTGFFLRYNGLRKY
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggatcggttcgtgtggtccagtggtttgctggaaattaacgaaactctggtgatccag
cagagaggcgtcaaactctatgatggagaggagaaggggaaaatggatctggggactctg
cttctaagcacacacagattgctctggagggaccacaaaaatcatgactgttgtatagcc
atgccactgtcacagattgtattatttgaggagcaggcaggagggatagggaagagtgct
aagatagtggttcatcttcacccagcgccttccaacaaagaacctggaccataccaaacc
agcaaatactcttacataaaactgtctttcaaagaacatggacagattgagttttctagg
cgattatcagaagagatgactcagaagagatgggagcgtatgccagtgtctctgcctatt
aatacaagcaccacttcacaggcaggacgaacgcgggcagttggaattgtgggtatcgag
aggaaactggaggaaaagcgaaaagagatggacaaaaacatttcagaggcatttgaagat
ctcagcaagcttatggaaaaggcaaaggaaatggtggaattatcccggtctatagctagc
aaaatcaaggataagcaaggtgacatcacagaagatgagactatccgattcaagtcctac
ctcttgagtatgggcatagcgaatccagtcacaagggaaacccatgggtctggaacacat
taccacatgcagttagccaaacagcttggcgagatactgctggcaccactggaggaacaa
ggaggcatgatggcattgacagaagtgtattgtcttgtcaaccgggctcgtggaatggag
ttactttctccagaagatcttgtaaatgcctgcaaaatgtttgaagcacttaaactgcct
ttaaggagagccactgaagacccaaatgtggcatttttttgtacacatacaagtacaggc
ttttttctaaggtacaatggcttgcgaaagtattga
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