Polyodon spathula (Mississippi paddlefish): 121321431
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Entry
121321431 CDS
T07273
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121321431
Peptidases and inhibitors [BR:
pspa01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
121321431
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
121321431
NCBI-ProteinID:
XP_041116309
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Position
10:complement(37272776..37299867)
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AA seq
1225 aa
AA seq
DB search
MSLKIAWILLLTGFQAVFTQDYYEERDLSKKLKNKLTSNTVQKHNSQALLDEDCSVELAF
LVDSSESAKDNHEQEKRFTTEVVDKLHGLRLSSGRGLSLKAGLLQYSSHVIIEQTFREWR
GPENFKSRIAPIVFIGHGTYTTYAITNLTQIYSNEATQGSVKIAVLLTDGVYHPRNPDIF
SATADAKNQGVKFFTVGITRIANEPSNIAKLRLLASSPASTFLLNLQDAGIVDKIVREVV
TVANEGCPLAQKCACDKGERGPSGSPGKKGRQGDEGGPGPKGQKGDGGLSGLPGRDGAEG
KPGFKGEAGERGECGTPGIKGDRGPEGSAGPRGLRGLQGPPGPLGDPGPEGMLGRKGERG
PTGPPGIQGETGIGFPGPKGDIGLQGRSGPVGPPGIGEPGLPGPPGPQGVQGERGQQGEG
LPGPKGDRGFEGPRGTRGQPGVGIKGEKGEFGPSGLPGPIGLPGVGIQGEKGVEGPRGPP
GQRGPAGEGFPGSKGDQGLPGEVGSPGERGIGESGPKGEPGATGFAGLPGLPGEDGAPGQ
KGESGLVGIRGPEGNPGIGIPGEKGDQGQRGVRGLPGPSGISGPAGAKGEPGVPGRLGMP
GQPGRPVMGPKGDTGPHGPPGPVGETGYGLPGPKGDRGNPGPIGPFGPKGEGYPGPTGPP
GPPGLQGEQGPEGIGLPGSKGDIGFRGLPGLPGPPGEGLPGPKGVLGRTGPPGPQGPPGE
GIQGPKGEHGPQGVTGPRGPPGEGLSGPKGDRGSQGERGRRGDKGDSGDPGVTGDSGRPG
AKGEAGLTREDIIKLIKEICGCGVKCKERPMELVFVIDSSESVGPENFEIIKDFVTALVD
RVTVGRNATRIGLVLYSLEVHLEFNLARYMTKQDVKQAIRKMLYMGEGTYTGTAIRKATQ
EGFYSARPSVRKVAIVMTDGQTDKRESVKLDIAVREAQAANIEMYAIGIVNTTDPTQAEF
LRELNLIASDPDSEHMYLIDDFNTLPALESKLVSQFCEDENGALVYNRITNGYGNGGGYT
YDEYQNNVNVRVSNQGGGGGGGGGGERVQPVPVNPLPAVSVNTDRSPQSTVQNKVEEDYE
EDYDEEIEPVHIQSSSFDNSRDSSISAADRSPVLPVRQSSSSPQSSSSSSSSSSSSVVIS
LGSSSTVKVKPTLKPVLPKEFAALDPRCALGLDQGPCREYNIRWYYDKQANACAQFWFGG
CNGNGNRFNTEDECKKTCVLTQGDN
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaaaattgcatggatcctgttgctaacaggatttcaggcagtttttacacag
gactattatgaggagagagatttatccaaaaaactgaaaaacaaactgacttcaaataca
gtacaaaagcataacagccaagctcttttagatgaagattgctcagtagagctggctttc
ctggtggacagttctgagagtgccaaagacaaccatgagcaggagaagagattcaccaca
gaggtggtagataaactccacggcctgagactgagttcggggcgtggattgagtttgaag
gcgggcttgctccaatacagcagccatgtcatcattgaacaaacattcagagaatggaga
gggcctgagaacttcaagtcccgcattgcacctattgtctttataggacatggcacctac
acaacctatgccattaccaatctcacccagatctactcaaatgaggccacgcagggaagt
gtgaagattgcagtgcttttgacagatggtgtgtaccatcctaggaaccctgatattttc
tctgccacggccgacgccaagaaccagggagtcaaattcttcactgttgggatcacaaga
atagctaatgagccttctaacattgctaagctacgcttattagccagctctccagcatcc
acattcctcctcaatctccaagatgccgggattgtggataaaatcgtccgtgaagtggta
acagtggctaatgaagggtgtccactagctcagaaatgtgcctgtgataagggagagaga
ggcccaagtggttcacctgggaaaaaaggtcgacaaggtgatgaaggaggccctggtcca
aaaggacaaaagggtgatggaggattgagtggtcttccaggacgagacggagcagagggc
aaacctggcttcaaaggagaagcgggtgaaaggggagaatgtggaactccgggaattaaa
ggagacagaggccccgaaggttcagctggtccaagaggactcagaggtctacagggacct
ccaggcccacttggagatccaggacctgagggaatgctaggaagaaagggtgagcggggt
cctactgggccgccaggaattcaaggggaaacaggaatcggattccctggtccaaagggt
gatattggtttgcaaggccggtcaggcccagttggtccacctggcattggtgagcctggc
ttaccaggacctccagggccacagggtgtccagggagagagagggcaacaaggagagggc
ttacctggaccaaagggagaccgtgggtttgagggaccaaggggaacccgtggacagcca
ggcgttggtatcaaaggagaaaagggtgagtttgggccttcgggtttaccagggcctatt
ggtttaccaggagtgggaattcagggtgaaaagggtgttgaaggaccaagggggcctcct
ggtcagaggggtcctgcaggggaaggctttcctggatcaaagggtgatcaaggtttgcca
ggagaagttgggtctccaggagaacgggggattggagagtctggaccaaagggtgaacct
ggagcgacgggattcgcaggtctcccaggtcttccaggagaagatggcgcccctgggcaa
aagggcgaatcgggtttggttggcatcagaggccctgaggggaatccaggaattggaatt
ccgggagagaagggcgatcaaggtcagaggggtgtccgtgggttgccaggcccttcagga
atttccggtccagcaggcgctaagggtgaaccaggcgttccgggacgtcttgggatgcct
ggccagccgggacgtcctgttatgggaccaaagggagatacaggcccacatggtcctcca
ggccctgtaggagagacaggctatggacttcctggtcccaagggtgaccgtggtaaccct
gggccaatagggccatttggacccaaaggggaaggatacccaggcccaactggaccccca
gggcctccaggtcttcaaggggaacagggaccagaaggaattggactaccaggatcgaag
ggtgatattggcttcagaggacttccaggtcttcctggcccaccaggtgaaggacttcca
ggaccaaagggtgttcttggacgaacagggccacctggtcctcaggggcctccaggggaa
ggcatacagggacctaagggtgaacatgggccacagggagtcactgggccaagggggcct
ccaggggaaggactgtctgggcctaagggtgatcgtggttcccaaggagagagaggaaga
aggggtgataaaggagatagtggtgatcctggagttactggtgactctggcagacctggt
gcaaaaggtgaagctggtctcactagggaagacatcattaaactgattaaagagatctgc
ggctgtggtgtgaaatgtaaagaaagacccatggaacttgtgttcgtgattgacagttca
gaaagtgtgggaccagaaaactttgagatcatcaaggattttgtaaccgccctcgtcgac
agagttactgtgggcaggaatgcaacacgaataggtcttgtcctttacagcttggaagtc
catttagaatttaaccttgccaggtacatgactaaacaagatgtcaaacaggcaatccga
aaaatgctgtatatgggagaaggcacttacacaggaactgctatccgcaaagccactcag
gaagggttttacagcgcccggcccagcgtgaggaaagtagccatcgtcatgacagatgga
cagacagacaagagagagtctgttaaactagatatagccgtgcgggaggcccaggcagct
aatattgagatgtacgccataggaattgtgaacaccacagacccaacacaagcagaattc
ttacgtgaattgaacctgatcgcttctgatcctgatagtgagcacatgtatctcattgat
gacttcaatactctgccagctttggaatccaaacttgtcagccagttctgtgaagatgaa
aatggagctctggtttacaatcgcattacaaatggatatggcaacggtgggggctacact
tacgatgaatatcaaaataatgtgaatgtaagagtttccaaccaaggaggaggaggagga
ggaggaggaggaggagaaagggtacagcctgtaccagtgaacccactcccagctgtatct
gtcaacacagacaggtctccacaaagcacagtacagaacaaagtggaagaagactatgaa
gaagactatgatgaggagattgaaccagtgcatatacaatcgagctcctttgacaattcg
agagacagcagcatttcagccgccgatagatctccagtccttcccgtgagacaatcttcg
tcttcacctcagtcctcctcctcctcctcctcctcctcctcttcttctgttgtcatatca
ttgggctcctcttctactgtgaaagttaaacctacattgaagccagttctacctaaagag
tttgcagctctggatccccgctgcgctttaggtttggatcagggtccttgtcgtgaatac
aatatcagatggtattatgacaaacaagctaatgcctgtgctcagttttggtttggtggg
tgcaatggaaatgggaatcgtttcaatactgaagatgaatgcaagaaaacgtgtgtgttg
acacaaggagacaactga
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integrated database retrieval system
