Polyodon spathula (Mississippi paddlefish): 121321438
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Entry
121321438 CDS
T07273
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121321438
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Others
Others
121321438
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
RIP
Motif
Other DBs
NCBI-GeneID:
121321438
NCBI-ProteinID:
XP_041116318
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Position
10:2300701..2425603
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AA seq
1277 aa
AA seq
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MESGVGICAFWNTALWSWLLISTSFFVIAKAEITCRSCQPPVAKPRPAELFWLMKTDTAE
TGTEFKREVIKYPDGTAGSHLEICKTHVLDCVAQTSACVFGKNIRSVRRKSTGQQHFNKL
TQHGLPKNKAHSQVAAAVDEKVSSLRQPEKLAGSKRSLPVIGNKANDNHWHRFKRNSLIQ
GKQGLKSTTLQQEGESSVLGDRKVRSASFAEQRLRRAELQWAGDEGKATDSRDKELKLTS
TTFALTGDSAHNQAMVHWSGHNSSVILILTKLFDFNLGSVTESSLWRSTDYGTTYEKLND
KVGPKTILSYLYVSPNNKRKIMLLTDPEIESSLLISTDEGATYQKYRLSFYILSLLFHPK
QEDWILAYSHDLKLYSSVEFGRRWQLVHERVAPNRFYWSVLGLDKEPDLIHLETSVAEGY
AQYITCKLQNCTEANKGRPFPGYIDPNSLVVQDEYVFVQVTTGGRPVYYVSYRREGFAQM
KLPKYTLPKDMHVISADENRVVAAVQEWNQNNTYNLYVSEARGVFFTLALENMVISREAE
GNVMIDLYEVAGINGMFLANKKLEKQVKTYITYNKGRDWRLLQAPATDARGNEISCLLPY
CSLHLHLQVSDNPYASGNIASKESAPGIIVASGSIGSELSLSNVSMFITSDAGNTWRQIF
QEEYSVLYLDQGGALVAIKHTPLPIRHLWLSFDEGRTWSKYSFTSVPLFVDGVLGEPGDE
TLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEEEYQTWHLHNQGDPCIMGMKRIYRKLK
PTARCVMGRDTPFTMTSEPCLCTEADFECDYGYERHSDGKCLPAFWFNPSSMSRSCSTGK
SFLNSTGYRKVVSNNCTAGVKEIYTARKQQCPRRAPRGLHLVTSDGTLTATIGNNVTFLV
FLEEGDGSRTSVTLDFGDGNAVSYSNVSSIEDGIKHVYKHVGIFKVTAIGENSLGSDSAV
LYLHVTCHLDRVHLSAPFVAVKNKEINLTAVLWPNQVGTVTYIWWFGNNTEPVITLEASV
SFTFMREGINTVTVQVSARNEILQDKKAIAVHEHFRSQLLAFSSNLDEYNPDAAEWRQDV
SKVVKNSLVQATGIAEEQLLVTVLPGLPTAAEFFLLPDKELTEGRAERNTAHLDQLSEIL
LSALNQNIVQFTLRAGVQVSVYAAHLSAAPLVDTAEGHSGSAMLMLLSVVFVGLAVFIIY
KFKRKIPGINVYAQMQNEKEQEMISPVSPIDSTPNNPQRELGTSLDLLDKELDTRTIGCI
PSHSDRISQDIPIYVNV
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggagagcggggttggtatctgtgcattctggaacactgctctctggagctggcttctg
atctccacttctttctttgttattgctaaggcagagataacttgcagatcatgtcagccc
ccggtggccaaaccgcgtccagcggaattgttttggctaatgaagacggacactgccgaa
actgggactgaatttaaaagggaggttataaagtaccctgacgggacagccgggtctcat
cttgagatttgcaaaacccatgttcttgattgtgttgcacaaacgtccgcttgtgttttc
gggaaaaacataaggtccgttcgtagaaagagcacagggcaacagcactttaacaaactg
acccagcatggactgccaaagaacaaggctcacagtcaagtggctgctgctgttgacgaa
aaagtttccagccttagacagcctgagaaactcgccggtagtaaacgttctttgcctgtc
atcggcaacaaagcgaatgataaccactggcaccggttcaaaagaaatagcctgatacag
gggaaacaagggctgaagtcaaccactttgcagcaggagggagaatcaagtgttttggga
gacaggaaagtgcgcagcgcctcgtttgctgagcagagactgagacgcgctgaactgcaa
tgggccggcgatgaagggaaagcgactgactccagggacaaagagttgaagcttaccagc
accacctttgcactcaccggggattctgctcataaccaagccatggtgcactggtcagga
cacaacagcagtgtgattctcatccttacgaagctgtttgacttcaacctgggaagtgtc
acagagagctctttgtggaggtcaactgactatggaaccacctatgaaaaacttaatgat
aaagtgggaccgaagaccattttgagctacttgtatgtcagccctaacaacaagagaaag
ataatgctgctgactgacccggagatcgaaagcagcttgctcatcagcacagacgaaggg
gccacctatcagaagtatcgactgagcttctacattctgagcctactgtttcatcccaag
caggaagactggatcctggcttacagccatgacctaaagctgtacagctctgtggaattt
gggaggagatggcagctggtccatgagagagtagccccaaacagattctactggtctgta
ttgggtttagataaggagcctgatctcattcacctggagacaagtgttgcagaaggatac
gctcaatatattacctgcaagcttcaaaactgtaccgaggccaacaaaggcaggccattt
ccaggatatattgaccccaattccctggttgttcaggatgagtatgtgtttgttcaggtg
actactggaggcaggccagtttattatgtgtcttataggagagaaggctttgcacagatg
aagctaccaaagtacactttaccaaaggacatgcatgttatcagtgcggatgagaaccgt
gtggtagccgctgtgcaggagtggaatcagaataatacctataacctgtatgtgtcagag
gctcgaggtgtcttcttcactctggccctggagaatatggtgatcagcagagaagctgag
gggaacgtcatgattgacctctatgaggtagcagggataaacggaatgttcttggcgaac
aagaagcttgagaagcaagtgaagacctacatcacgtacaataaagggagggactggcgt
ttgctgcaggctcctgccacagacgcgagggggaatgagatcagttgcctgctgccatac
tgctccctgcacctgcacttacaggtatctgacaatccctatgcttcaggaaatattgcc
agcaaagaatcagcacccggaattatagtggcttcaggttccataggttctgagctgtca
ctcagcaatgtgagcatgtttataacttccgatgctggaaacacctggagacagatcttt
caggaggagtacagtgttctttatctggatcagggtggtgctcttgtagctattaaacac
acacccctcccaatacgccatctttggttgagtttcgatgaaggcaggacatggagtaaa
tacagtttcacatcagtccctctgtttgtggacggggtgctgggagaacctggagatgaa
actttaataatgacaatatttggacatgtcagccatcgatctgagtggcagcttgtcaaa
attgactttcgatccatcttcaatagaaggtgcacagaggaggagtatcagacctggcat
ctacacaaccagggtgatccatgtattatgggaatgaaaagaatttacaggaaactgaaa
ccaactgcccgttgtgtgatgggaagagacacgccttttacaatgacatctgaaccctgc
ctctgcactgaggctgactttgagtgtgattatgggtatgagcggcacagtgatgggaag
tgtttgccagccttctggttcaatccatcctcaatgtcaagaagctgcagcactggaaaa
agttttctcaacagcactgggtaccggaaggtggtgtccaataactgcactgcaggggtg
aaggagatctacacagcaaggaagcagcagtgccctcgccgcgctccccggggcctgcat
cttgtcaccagcgatggcacactgacagccacaatagggaacaatgttaccttcctcgtc
tttctggaagagggagacggctctcgaacgagtgttacgttggattttggagacggcaat
gctgtgtcctactccaacgtgagttccattgaggatggaatcaaacacgtttacaaacat
gtagggatttttaaagtgactgcaattggagaaaacagcctaggatcagacagtgctgtc
ctctacctgcatgttacatgtcacctggatcgcgtccacctctctgccccttttgtagct
gtaaagaataaagagatcaatctaacagcggtcttgtggccaaatcaagtgggcactgtc
acatacatctggtggtttgggaataacactgagcccgtaataaccctggaggcaagtgtc
tcctttacattcatgagggaaggaataaacactgtgacagtgcaagtctctgctcggaat
gaaatactgcaagacaaaaaggccattgccgtgcatgagcacttcaggtctcaactgctg
gcattttcttctaatctggatgaatacaaccctgatgctgctgaatggaggcaggacgtc
agcaaggtcgtcaagaattcattggtccaagctacaggtatagcagaggagcagctcctg
gtgacggtcctgccaggtcttccaacggctgcagaattcttccttttaccagacaaagaa
ttaacagaggggagagcagagaggaatacagcacacctagaccagctttcagagattctg
ctcagcgccctcaaccaaaacatagtgcagttcactctgcgggcaggtgttcaagtctct
gtgtacgctgctcatttatcagcagctcctcttgtggataccgctgaagggcacagcggc
tcagccatgctgatgttgctatcagttgtatttgtgggactagctgtctttatcatttac
aagtttaaaaggaagatcccaggcatcaatgtctatgcgcagatgcagaacgaaaaagaa
caggaaatgattagtccagttagtcctattgacagcactccaaataacccacaaagggaa
ttggggacttcattggatctactggacaaggaattagacacacggacaataggatgcatt
ccatcacattctgacaggatctcacaggatatccccatatacgttaatgtttga
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