Polyodon spathula (Mississippi paddlefish): 121321493
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Entry
121321493 CDS
T07273
Symbol
hps1
Name
(RefSeq) LOW QUALITY PROTEIN: Hermansky-Pudlak syndrome 1 protein
KO
K20193
Hermansky-Pudlak syndrome 1 protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121321493 (hps1)
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Others
BLOC-3 complex
121321493 (hps1)
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Gene cluster
GFIT
Motif
Pfam:
Fuz_longin_1
Fuz_longin_2
Fuz_longin_3
SPEF2_C
Motif
Other DBs
NCBI-GeneID:
121321493
NCBI-ProteinID:
XP_041116403
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Position
10:complement(8852611..8862202)
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AA seq
568 aa
AA seq
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MKCLLVASESAEVLFYWADPEFEQNIRDQYGPRQYEGDTYPAFEDSVNTLFAPLIISCST
LIEKINNTYTSFITENTHQYILHQFGECLYIAVNGDGGETEEDLRRKIYVMKKLIKVHFG
MVTLNSTLLRKELRPQDTEQRIHLWKMLQSLLETYSLLREQDQSFLVEVVERLIHPTLCE
QCIEFLERHVVQQINRSPERAREEVLHAFILVNTKLLAFYSSRNASSIKPSDLLSLILLV
QNLCPSNNQLDDAALEGPXGSSVPEVFYTPEPSPTGRESDAAEMEGESTPVFQFVDPDVQ
MAEDSLKTLEAQPPDPATPCRVFLEAMFKEGYCPMMPHSMYCLPLWPGISLVLLTKLQNT
WTDFKNKAFSRAVQGTSREEKLMDWKDFLLVKSKRNITMVSYLEDFPGLVHFIYMDRMAG
QMVAPSLNVTDLSTTELGKGPLAHFIKSKVWSLVGTARLYLQKGYTTVTLRDGDYYFCYF
LWFESETGYKLEGIELPVLSEASAPIGMLTGDYYRKLLRYYSKNHHTEIVKCYELLTIHL
GVIPTDYIVQHRCELAKKLWEPTRIPLL
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtctgctggtggccagtgaaagcgcagaggttctgttctactgggccgaccct
gagttcgagcagaacattcgagatcagtatggacccaggcagtatgagggagacacatac
cctgcattcgaagacagcgtcaacaccctgttcgctcctctgatcatctcctgcagcacc
ctgattgaaaagattaacaacacctacacctccttcatcacagagaacacccatcaatat
atcctccaccagtttggggaatgcctgtacattgctgtcaacggggatggaggggagact
gaggaagacttgaggaggaagatctacgtgatgaagaagctcatcaaggtgcacttcggc
atggtgaccctcaacagcaccctcctgaggaaggagctccgaccccaggacacagagcag
cggattcatctctggaagatgctgcaaagccttctggaaacatacagcctcctgagagaa
caggaccagagctttctagtggaggtggtggagcggctgatccaccctacgctgtgtgag
cagtgcatcgagttcctggagcggcatgtggtgcagcagatcaacaggagccccgagcgg
gccagagaggaggtgctgcatgctttcatactggtgaacaccaagctgctcgccttctac
tccagccgcaacgccagttcaatcaagccctcggacctgctgagcttgatcctgctggta
cagaacctgtgtcctagcaacaatcagctggacgatgcagccctcgaggggccataaggc
agctctgtgcctgaagtgttctacaccccagagccgtctcccacgggcagggagtcagat
gcagctgagatggaaggagagagcacgcctgtctttcagtttgttgatccagatgttcag
atggctgaggacagcctgaagaccctagaggctcagccgcctgaccccgcgaccccctgc
agggtctttctggaggccatgttcaaagagggttactgccccatgatgcctcactccatg
tactgcctgcccctctggccgggcatctcactggtgctgttgaccaagctgcagaacacc
tggactgacttcaagaacaaggcattttccagagcagtgcagggaacctccagggaggag
aagcttatggattggaaggacttcctgttggtgaagagcaaaaggaacatcaccatggtg
tcctacctggaggacttcccaggattggtgcactttatctacatggatcgcatggctggg
cagatggttgccccctccctcaatgtgacggacctctccaccacagagttgggcaagggg
ccgctcgctcacttcatcaagagcaaggtgtggtctctggttggaacagcacggctctac
ctacagaaagggtacactacagtgaccctgagagatggcgattattacttctgctacttc
ctgtggtttgagagtgaaacgggatacaagttagaggggattgagctgcctgtcctgtct
gaggcctctgccccaatagggatgcttactggggactattacaggaagctcctgaggtac
tacagcaagaaccatcacactgagatcgtgaaatgttacgagctgctgaccatccacctc
ggggtgattcccactgactacatcgtccagcaccgctgtgagctggccaagaagctgtgg
gagcccacgagaatccccctgctgtag
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