Polyodon spathula (Mississippi paddlefish): 121321642
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Entry
121321642 CDS
T07273
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit-like
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121321642
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121321642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121321642
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
121321642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
SHLD2_C
SHLD2_OB1
RHD_dimer
OB_SHLD2_2nd
Ank
Ank_2
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
121321642
NCBI-ProteinID:
XP_041116576
LinkDB
All DBs
Position
10:complement(7885813..7922498)
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AA seq
1709 aa
AA seq
DB search
MERKQRIHIFLGAPIFSKEKGTTGTETPVEETLENWNRIELSCREGKLHPVSELREGGAI
AGDAGICRSKRAAGYSACSSACNHSDRLSVNRTRPSSDPSRQNEPCSPLEMGKEAARQGT
EGTGAQRSQTASGRKRLVSRSLALPSDAITEYLDSCFPEDADPRTAEQELSTQTEFLSVW
ATSQAAILKGLLASECGERLEVQEEETVSGLAPERHTPTRGWNSTPGAVLGATQPDRSSP
EEPHTAEGSEELFSAPGELLPRGEGGVVMETCCAALLCSQEEPPHQDGDATEKRRETEEG
ASKPTTYSPPAPAPASKKTRTSPSNQKGRRGLRETRGFPGKPALLMSCVDQGQRYEVLAC
VLNPCHLKEVRVRSGMAAGSAVPLATIMVTDQSGTERKVVLWRAAAFWALTVYPGDLVLI
TDVTVKEDQWRGETVLQSTPASKLLNLGQFFNINHERVPGYVDRIALAELQGYLREKHSH
LLSIPPRAPQSPHSIRHARLGVLRADTLVHALLRVTCISTLTVPVYSYRGQSLRKVVLSV
EQGDGQQGALVLWGGATAWLPRIQRKRALVWDFRCLLVRWGSVSGFLELHSTPWSSCEPL
FPDDSRALEFWSWSNLECCETDLQTLLSFRHSGEVVVKAHITALQFTGRTSHNAQLLMDG
DTPLQRIVGLVADDITFVGCGRCGSELGVDDNRIYQLCYPCLPHTGVKRYYRPAVMTVTD
KDSVISVEVPPVLVEQIFLNIPAEQLNKPTVPSSQLLFSQVVSEMCLSLLSHPADIFLLT
LRCSFLLDENSIPLRQHFLLLDFHPELMDNLMIDGDQLTYEDLSSCHFLPPISSIHVKAE
PYLETANGPYLAIIEEPKQRGFRFRYECEGPSHGGLPGASSEKNKKTYPTVKIYNHVGYA
RVEVQLVTHSDPPRVHAHSLVGKQCSEHGVCSVNVGPNDLTAQFNNLGILHVTKKGVNEV
LTKRLKAERMRQRGDDVVITEQEEQEIANEARELGKVMDLNVVRLKFMAYLQDSNGGFTL
ALKPVISQPIYDSKSPNASNLKISRMDKTSGSATGGDEIFLLCDKVQKDDIEVRFYEDDD
NGWEAYGDFAPTDVHKQYAIVFKTPPYRKNQIDRPVTVFLQLKRKKGGDASEPKQFTYHP
QIQDKEEVQRKKLKPLLHYQDHYGRGGAGGPPGGFGAGGAGGGGSGFFPFPHSVNSSFSY
NPMGGGYQGGTQMPGAAQRQDCPASSGAPQGGQSPQQQLVQIASLLQSKATLTARRTARA
LLDYASTGDARMLLAVQRQLCGVQDENGDTPLHLAIIHQQASVVEKLVQVIVSIPDQRIL
NQSNHLRQTPLHLAVITKQHKIVDFLLKAGADPTPLDRYGNSVLHLATPTGDEHMLRILL
SHLKPHSRYLLNTPDYNGLYPLHLAVQRSGEQCLRVLVDAGAEVNAVERKSGCTALHLAV
QQDLFAVACLLITELNADVNVCSFGGNTPLHLAASQGSPVLCSMLIAAGAERLVENDEPV
CMSSASLSEEEREETQEEESRGRKGAEPAQTLTARPNILASNPRKRPPTRGHTPLDLAKN
QKVQDILEGKPRRPGKTPAKLKTTPLAGTVCPLDSDTLARLSTALSAGGVQWKQLAEKLG
MRTLADLYEECPSPCNSLLQGYQVAGGRVESLIDALQALGLNEGVRVLREAELKDKTHTT
EVKVDSGYGSHPTEQLEQEEMDESVPANS
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggagagaaaacagagaatccacattttcctcggcgctccgatattctctaaggaaaag
ggaacgacgggaacagagactcccgtggaggaaactttggaaaactggaaccggattgag
ctttcctgccgagaagggaaacttcaccccgtctctgagctgagagagggaggagccatt
gcaggggatgcagggatctgccggagcaaaagagccgctggctatagcgcctgcagtagc
gcctgcaatcactcagacaggctgagcgttaaccgaacaagaccatccagcgatccgtcc
cgccaaaatgaaccctgctcccctctggaaatggggaaggaagcagcgaggcaaggaact
gaaggaacaggagcccagcgttcccaaacggcttccgggagaaagcgcctggtcagccgc
agtctggcattgcccagcgacgctatcacggaatatctggacagctgctttcctgaagac
gcagatccacggacagctgagcaggagctgtccacgcagacggaattcctgagcgtgtgg
gccaccagccaggccgccatcttaaaggggctgctggcgtcggagtgcggggagagactc
gaggtccaagaggaagaaaccgtctcaggactagccccagagcggcacacccctacgaga
ggctggaactcaaccccaggggccgtattgggagcgacccagccagacagatcctcgcca
gaggagccccacactgcggagggctcagaggaactcttcagtgcccccggcgagctgctg
cctcggggggagggaggcgttgtgatggagacgtgctgcgcagcgctgctctgctctcaa
gaagaacctccccatcaagatggtgacgctactgagaagagaagagagactgaggaaggg
gcctccaaacccacaacctacagtccccctgcccctgcccctgcctccaagaaaaccaga
acctccccttccaaccaaaagggaaggagaggcctgagggaaaccaggggctttcctggg
aagcctgcactgctgatgagctgtgtggaccagggtcagcgctacgaggtcctggcctgt
gtgctgaacccctgccatctgaaggaggtcagagtgagatcagggatggccgcaggctca
gctgttcccctggcaaccatcatggtgacggaccagtcggggacagagaggaaggtggtc
ctgtggcgggcagcggcgttctgggctctgactgtgtaccccggggacctggtcctcata
acggatgtgactgtgaaggaggaccagtggagaggggagacagttctgcaatccactcca
gccagcaagctactcaacctgggccaattcttcaacatcaaccatgagcgagttccagga
tatgtggacaggatcgccctggcggagctgcaggggtatttgagggagaagcactcccac
ctcctctccattccccccagagcccctcagagtccccacagcatccgacacgcccgtctg
ggggtcctgagagccgacacgctggtccatgcgctgctgcgggtcacatgcatctccaca
ctcactgtgccagtgtactcctacagggggcagtctctcaggaaggttgttctgagtgtg
gagcagggagatggccagcagggggcactggtgctgtggggaggtgctaccgcctggctg
ccgcgcattcagaggaagagagcgctggtgtgggatttccgctgtctgctggtacggtgg
ggctctgtttcagggttcctggagctgcactccaccccctggagctcgtgcgagcctctg
ttccctgatgacagtcgggccctggagttctggagctggtccaatctggagtgctgcgag
acagacctgcaaactctgctctctttccgacactcaggggaagtggtagtgaaggctcac
atcactgctctgcagttcacgggcagaacctcccacaatgcccagctgctgatggatgga
gacacgcccctgcagaggattgtgggactggtggctgatgacatcacctttgtaggatgc
gggaggtgtggctccgagctgggagtcgacgataacagaatctaccagctctgctacccc
tgcctgccacacactggagtgaagcggtactacaggccagcagtgatgacagtgacagac
aaggacagtgtaatctcagtggaggttcctcccgtgcttgtggagcagatcttcctgaat
attccagcagaacaactcaacaagccaacagtcccctcctctcaactcctcttctctcag
gtggtgtcggagatgtgcctctctctcctctctcacccggctgacatcttcctcctgacc
ctgaggtgcagcttcttattggacgagaacagcatccccctccgacagcacttcctactg
ctggacttccacccagaactaatggacaatctaatgatagacggtgatcagctgacttat
gaagatttatcctcgtgtcattttttaccaccaatctcaagcatccacgtcaaagcagag
ccgtacctggagacagctaacggtccctaccttgcaataatcgaagagccaaaacagaga
ggatttcgttttcgttatgagtgcgagggtccctctcacggagggctgcccggggcgtcc
agtgaaaagaacaagaagacctaccccactgtcaagatctataaccacgtgggctatgcc
agggtggaggtgcagctggtgacgcactcggacccgccccgcgtccacgcgcacagcctg
gtggggaagcagtgcagtgaacacggggtgtgcagcgtcaacgtggggcccaacgacctc
actgcacagttcaataacttgggtatcctgcacgtcacgaagaagggagtgaatgaagtg
ctgaccaagaggctgaaggcggagaggatgaggcagcgaggggatgacgtggtcatcact
gagcaggaggagcaggagatagcgaacgaggctcgggagctgggaaaggtgatggacctg
aacgtggtgaggttaaagttcatggcgtacctgcaggacagcaacgggggtttcaccctt
gccctgaaacccgtcatctcccagcccatctacgacagcaagtctcccaacgcatcgaac
ctgaagatctctcgcatggacaagacatcgggctcagcgacgggaggggacgagatcttc
ctgctctgtgacaaagtgcagaaagatgatatcgaggtgcgcttctatgaggatgatgat
aatggctgggaggcgtatggagacttcgcacccacagacgtgcacaagcagtacgccatc
gtgttcaaaacccctccctacagaaagaatcagatcgatcgccccgtcaccgtgttccta
cagctcaaacgcaagaaggggggtgacgccagcgagcccaagcagtttacataccacccc
cagatacaagacaaggaggaggttcagaggaagaagctgaaacccctccttcactaccag
gatcactacgggcgagggggggctgggggtccaccagggggcttcggagcagggggtgca
ggaggaggaggcagtggttttttcccctttccccattcagtgaactccagcttctcttac
aaccccatgggggggggctaccaggggggcacccagatgccaggagcagcgcagcgacag
gactgccctgctagcagtggggcccctcaaggggggcagtccccacagcagcagctcgta
cagatcgcctcgctactccagtccaaggccacactgacggccaggcgcacagcccgcgcc
ctgctcgattacgccagcacgggagacgcgcgcatgcttctggctgtgcagagacagctg
tgtggggtgcaggatgagaacggggacactcctctgcacctagctatcattcaccagcag
gccagcgtggtggagaagctggtgcaggtcattgtgagcatcccagaccagaggatcctg
aaccagagcaaccacctgagacagactcctttgcacctggctgtgatcacaaagcagcac
aagattgtggacttccttttgaaggcaggggctgaccccacccccctggatcgctatggc
aactcggtgctgcacctggcaacgcccaccggtgacgagcacatgctgcggatactgttg
agtcacctgaaaccgcacagccgctacctgctcaacacacctgactacaatggtctctac
ccccttcaccttgcggtgcaaaggtccggtgagcagtgcttgcgcgtgctggttgatgcc
ggcgcggaggtgaacgcagtggagaggaagagtggctgcactgccctgcacctggctgta
cagcaggacctgtttgctgtggcctgcctactcatcacagagttgaacgctgatgtgaat
gtctgctcattcggtgggaacacccccctgcacctggctgccagtcagggctccccagtg
ctgtgctccatgctcatcgcagcaggtgctgagaggttggtggagaacgatgagccagtc
tgcatgtcctctgcgtctttgtctgaggaagagagggaggagacgcaggaggaggagagc
agggggagaaagggggcagagccagcacagaccctcaccgcacgcccgaacatcctggcc
tccaacccccgcaagagaccccccacacgaggacacacccccctagacctggcaaagaac
caaaaggtgcaggacatcctggaggggaagccaaggcgaccagggaagacccccgccaag
ctgaagaccaccccccttgcaggtactgtctgccccctggacagtgacaccctggcccgg
ctcagcactgctctgagtgcggggggtgttcagtggaagcagctggcagagaagctgggc
atgaggaccctggcagacctgtatgaggaatgcccttccccctgcaacagccttctgcag
ggctaccaggtggcgggcggccgagtggagagcctgattgatgctctgcaggctctgggt
ctcaatgagggagtgagggtgctgagggaggccgagctcaaggacaagacccacaccaca
gaggtgaaggtggacagtggctatggcagtcatcctacagagcagctagagcaagaggag
atggacgagtctgttccagccaactcctga
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integrated database retrieval system
