Polyodon spathula (Mississippi paddlefish): 121321728
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Entry
121321728 CDS
T07273
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121321728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121321728
03036 Chromosome and associated proteins [BR:
pspa03036
]
121321728
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121321728
Coactivators
SAGA/TFTC/STAGA complex
121321728
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121321728
STAGA complex
121321728
TFTC complex
121321728
SAGA complex
121321728
SLIK complex
121321728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
eIF2A
VPS8_N
WD40_like
CDK5RAP3
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
121321728
NCBI-ProteinID:
XP_041116752
LinkDB
All DBs
Position
10:complement(3050250..3055894)
Genome browser
AA seq
758 aa
AA seq
DB search
MAAVQDGPIEPEPENEIKTEASNEFPGNPGDASGGVPPTAPVAAVATEKPAAAATDSTER
QTLLAVLQFLKKSKLFESEEILRREAGLLNETGDSQGAAPGGAGLGGGGGAEPESGDASS
VLSRVAGAVAVAQSANATPAPAKVAPVVTGGEDQPDVNVVLAAYSQQGDPVLYPVYYSGL
KRFIDSVLDCHRAELSQVFYPLFVHMYLELVYNQYEKEAKAFFDKFHGDQECYYKDDLRI
LSGLTKSEHMKGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDI
FDGMPRSKGQIDSMSGSLAGEAKREANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPK
KKKPKKDSTGSKSKKQDPNAPQQSRIPLPELKDSDKLDKIMNMKEATKRVRLGPESLPSI
CFYTFLNAYQGLTAVDFTDDSSLVAGGFADSTVRVWSVTPKKLRGVKTAGDLSLIDKDSD
DVLERIMDEKTASESKNLYGHSGPVYGISFSPDRNYLLSCSEDATVRLWSLQTFTCLVGY
KGHNYPVWDTQFSPYGYYFISGGHDRVARLWATDHYQPLRMFSGHLADVTCTRFHPNSNY
VATGSADRTIRLWDVLNGNCVRIFTGHKGPIHCLAFSPNGKFLASGATDGRVLLWDIGHG
LMIGELKGHTDTVYALKFSRDGEILASGSMDNTVRLWDTVKAFDDIETDDFTAATGHITL
PENSQELLLGSYMTKSTPVIHLHFTRRNLLLGAGAYNP
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatgggccgattgagccggagccagagaatgaaatcaaaacagaa
gcttcgaatgagtttccggggaaccctggcgacgccagcggaggggtccccccaacagcg
cctgtggctgcagtggctacagagaagccagccgctgcagctacggactcgacggagcgc
cagaccctgctggctgtgctgcagttcctcaagaagagcaaactcttcgagtccgaggag
attctgcgacgcgaggcagggttactcaatgaaaccggcgactcgcagggcgctgccccc
gggggagcaggcttgggaggcgggggaggtgcagaaccagaaagcggggatgcctcttca
gtccttagcagagtggccggggctgttgctgtagctcaaagcgcgaatgcaactccagcg
cctgcaaaggtggcaccggtagtcaccggaggggaagaccagccagatgtaaacgtagtg
ttggcggcctacagccagcagggggacccggtcctgtacccggtttattacagcggactg
aagaggttcatagactcggtgctggactgtcaccgagcagagctgtcccaggtcttctac
ccgctcttcgttcacatgtacctggagctggtttacaaccaatacgagaaggaggccaag
gcattttttgacaaattccatggggatcaggaatgttattacaaggacgatttacgcatt
ctttctggactgaccaagagcgagcacatgaaggggaacgagaccctgctggatttccgg
accagcaagttcgtgctgcggatctcccgcgactcctaccagctgctgaagaggcacctc
caggagcgtcagaacaaccagatctggaacatcatccaggagcacctctacatagacatc
ttcgatgggatgcctcgcagcaagggccagattgacagcatgtctgggagtttggctggg
gaggcgaagcgggaggctaacaaagctaaggttttctatgggttgctgaaggaaccagaa
atcgaggtgcccctggatgacgaggatgaagaggctgaaaatgaggaaggaaaacccaaa
aagaagaagcccaaaaaggacagcacgggatcaaagagcaaaaaacaggaccctaacgct
ccacagcaaagcagaattcctctcccagagctgaaagattcagacaagctggataaaata
atgaatatgaaagaagccaccaaacgggtgcgtctgggtccagagagcttgccgtccatt
tgcttctacacctttctcaatgcctaccagggtttaacagcagttgattttacggatgat
tccagtctggttgctggaggttttgcagattcgacagtgcgagtgtggagtgtcacccca
aagaaactgcggggtgtgaagactgcaggagatctgagcctgattgataaagattctgac
gatgtgctggagaggattatggatgaaaaaactgccagtgagtccaagaacttgtatggg
cacagtggaccagtctatgggatcagcttcagtccagacaggaactaccttttgtcatgc
tcagaggatgccacagttaggctatggagtcttcagaccttcacgtgtctagtgggatac
aaaggacacaactaccctgtgtgggacacccagttctccccctatgggtactacttcata
tcgggaggacacgacagagttgctcgcctctgggcaacagatcactaccagcctttacgg
atgttttctggccaccttgctgatgtcacttgcacccgattccaccccaactccaactat
gtagccacaggctcagctgacaggaccatccgactctgggatgtactgaacggaaactgc
gtccgtatcttcacagggcacaagggcccaatccactgtctggcattctctccaaatggg
aaatttctggcatctggagcaacagatggaagagtcctgctctgggatatcggacatgga
ttgatgatcggtgaactcaaagggcacacggacactgtctatgcacttaaattcagcaga
gatggagagattctggcatcaggctccatggataacactgttcgactatgggacacagta
aaagcttttgacgatatagagacagatgatttcactgcagcaactggacacattacactt
ccagaaaactctcaggagctgttactggggtcatacatgaccaaatccactccagtcata
cacctccatttcacacgcagaaacttgttgctcggtgcaggggcatataacccttag
DBGET
integrated database retrieval system
