Polyodon spathula (Mississippi paddlefish): 121321785
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Entry
121321785 CDS
T07273
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121321785
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
REC104
Motif
Other DBs
NCBI-GeneID:
121321785
NCBI-ProteinID:
XP_041116919
LinkDB
All DBs
Position
10:complement(2932389..2966461)
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AA seq
1509 aa
AA seq
DB search
MDSLTTKMSTNSSRSFGTSGNSVIETVTTTSRLTTLPPRGSSGGSGGAGSGQRSVSSMER
QVTSHGNTSYFSSSGGGGSSKGNFSSSVSHRGQGSNSSLAYSPSSTLERKVIVNRQGGYE
ESSSGNSSPEYTRKEFGSVSGISATRGRSQSRESEIRARLQSASPSTRWTELDDVKRLLK
GSRSASVSPSRSSSNTLPIPKKATVETWTVTDSSQSVSERYDTAILNSALPSYTWSSTLP
AGSSMVSGYGYQANANNLSPSSSLMTANALSSVSVQGVQNNLALSPAPLSSSLTTSSTVY
GVQNNLAHSTTPVLGISNGTHSPTVYAMQKNVSAASQGPAVTSTGVSTTTVSQSRDQIDD
VFRKDYKFLLLEKENMPSKKETELLIMAKDSGKLFTTTASNGTCSSFSDDTLKREKMMLS
SSADTGLKAETNPHFGSSRTATKDKATYAEIRKDDDYGGGGGGGEGCCGGSCCSWWKWLL
GLFLGLLLLLGLLFGLIALASEVNKLKERVAVLEGSGRTSRLTSVNIDGADPAYSEQIGA
RGSARSSLGTGVNLGSDSTDSDLQLQRTVQQLLRAELQSDKVRASLAVQGERGAPGPKGD
PGSPGVRGDAGFPGVPGTPGVIGHPGPEGPKGQKGSSGDPGSEGLVGQRGREGLPGPRGE
PGPPGFGEKGDKGSPGDAGPPGVAGFPGPMGHKGSMGSPGPSGTAGSPGLQGFRGDTGLP
GPKGDKGSIGPAGPKGDQGEKGPRGSSGDTGLRGLPGPHGEAGAKGSAGPPGADGHKGPR
GDQGPIGLPGIRGPSGPPGDPGLPGLSGSQGPPGLPGNPGVSGSKGEAGEPGKIINAEGS
KAVVVPGPPGPAGPPGPSGPTGPPGLPGPIGPAGNPGHPGSKGSRGDRGLPGEPGITVET
SRSVSSTKFQQESGSVQGPPGPPGPPGPPGHGVPGPPGPRGDPGIGQPGMPGAKGEPGSF
VPNSGTFFAGPPGPSGLPGPKGSEGEQGPRGYPGEPGQPGLPGSPGGDSGRGEPGPPGSP
GLPGPQGPPGQDGREGAKGDKGDAGVPGAPGIPGAAVSRGGNSRVYQGPPGPPGPPGAPG
TPGSGSPDSLPDIRQYITDYLQSDSVRNYMTGPQGPPGPPGPPAGGSVPVDDLASRVISY
LQRTGMSAGVPGPPGPPGTPSVDAIIALLQRQEVRQYLVGPPGPPGPSGSSGLGSINQQE
LATRIINIMKSRGLQVGLPGPPGPPGPPGSTYGDISALLQNSEFRGFVGPPGPPGTPGRP
GSPGPMGPSGIATVSGTGYRLEDIKNYLQNVGFSGLPGPAGPPGPQGPPGVSGGLVSYAE
NTQKDRFRTELIQYLTSDSMRQLISGPPGPPGPRGFKGERGDSGYSRVEGGLSGTLDYTA
MAVKVSDYIKTQGLLQDVSYSVSERVGRPGHPGPPGPPGPPGPPGYSRVIAAYGNVTADL
MQFFRTYGTIPGPVGPKGDRGFPGHKGDRGEIGLTGQTGLPGLPGIQGEKGEKGEQVPVG
WRKRRNIGV
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggacagcttaacaacaaaaatgagtacaaattcctctaggagttttgggacatccggc
aacagtgtaatagaaactgtgaccaccactagcagactgacaaccttacctcccaggggc
agtagtgggggcagcggcggcgcaggcagtgggcagaggagcgtttcttccatggaaaga
caagtcacctcacacggcaacactagttatttctcatcatctggcgggggtggcagctca
aaggggaatttcagctcctctgtgtctcaccgaggccagggctccaactcatcacttgcc
tactcccccagctccaccctcgagaggaaggtcatcgtcaaccgccaaggaggatatgaa
gagagttcaagtgggaactcttcaccggagtacacaaggaaagaattcggttcagtgtca
ggaatctcagccactagagggagaagtcagagcagagaaagtgaaataagagcaagattg
cagagtgcctcaccatccaccaggtggacagagctggacgatgtcaagaggctgctgaag
gggagtcgctctgccagcgtgagtccctcacgctcatcatccaacaccctgcccatccct
aagaaagccactgtggaaacatggaccgtgactgacagttctcagtcggtttcagagcgg
tatgacacagctatcctgaactctgctctgccttcctacacatggagctccacgctccca
gcagggtcttcaatggtcagtgggtatggctaccaagccaacgccaacaacctgtctccc
agctcctccctcatgactgcaaatgcactttcctccgtgtctgtgcaaggagtccagaac
aacttggctttgagcccggctccattgagcagcagtctaaccacgagctccacagtgtat
ggtgttcagaataacctggctcacagcactacccctgtcctgggcatctccaatggtacc
cacagccccacagtgtacgcgatgcagaagaatgtttccgcagcctctcaaggacctgct
gtgactagcacaggagtttctaccactacagtctcgcaaagcagagatcagatcgacgat
gtgttccggaaagactacaagttcctgctgctggagaaggagaacatgcccagcaagaag
gagacagagctgctcatcatggcaaaagacagtggcaagctctttaccaccaccgccagc
aacggaacctgcagctccttttctgacgacactctgaagagagagaagatgatgctgtcc
agctctgcggatactgggctgaaagctgaaacaaatccacactttgggtcttccagaaca
gcaacaaaagacaaggcgacttatgcagagattcgcaaggacgatgattacggcgggggc
ggcggcggtggagagggttgctgtggcggatcgtgctgcagctggtggaagtggctgctg
ggattgttcctggggttgctcctcctcctggggttactgttcggactcatcgccctggcg
agtgaagtgaataaactgaaggaacgcgtggcggttctggagggctctggtcggaccagc
cgtctcacctccgtcaacatcgatggcgcagacccagcctactctgagcaaatcggagcg
agagggtctgcgagaagcagcctgggcactggggtgaacctgggctcagattccacagac
tcggacctccagctacaacgcacagtgcagcagctgctgagagcagagctacagtccgat
aaagtccgagcttcactcgcagttcagggtgaaaggggagcaccagggcctaaaggggat
cctggttctccaggtgtgagaggagatgcaggttttccaggagtacctggtactccagga
gtgattgggcacccaggaccagaaggacccaaaggacagaagggcagctcaggtgatccg
ggatctgaagggctggtgggacagagagggcgggaaggcttgcctggaccacggggcgag
cccggaccccctggttttggagagaagggagacaaaggaagcccaggtgatgcaggacct
ccaggggttgcagggttccctgggccaatgggacacaaaggttcaatgggcagtccggga
ccttcaggcaccgcaggctctcctggtctgcaagggttccgaggagacacggggctgccc
ggtccgaaaggtgataaaggatcaattggaccagcaggtccaaagggtgatcagggggag
aaaggacctcgtggatcttcaggtgacacaggcttgcgcggattgccaggtccccatgga
gaggctggagctaaagggtctgcaggtcctcctggtgcagacggacacaaaggccccaga
ggtgaccaaggaccgattggtttgccagggatcagaggaccatccggtcccccaggagat
cctggcctgccagggcttagtggatcacagggacctccaggtcttccaggcaatccaggt
gtatctggatccaaaggtgaagcaggagagccaggcaagatcatcaatgcagagggatcc
aaggctgtggttgtgcctggcccaccaggaccagcaggacctcccggcccatctggcccc
actggacctcccggactcccaggtcctattggtcccgctggaaatccaggacatccaggc
tcaaagggatcccgaggagacaggggtctgccaggtgaaccgggtatcactgtggagacc
tccagatcagtcagctctactaagtttcaacaggagtctggaagtgttcaaggaccccca
ggcccgcccggcccaccgggacctccaggccatggagttccaggtcctcctggccccaga
ggagatccaggtattggccaaccaggaatgccgggtgccaaaggagagccagggagcttt
gtgcccaattcaggaacattctttgcaggaccacctgggccatctggacttcccgggccc
aaagggtcagagggtgaacaaggaccaagaggatacccaggtgagccaggccagccaggt
ctgccaggaagtcccggtggtgattctggaagaggcgaaccaggtccacctggatcacca
gggctaccaggtccacaaggcccgccaggccaagacggtcgagaaggtgctaagggagac
aaaggggatgctggagtcccaggtgctcctggaattccaggggcagcagtatcaagaggt
ggtaactcacgtgtctatcagggcccccctggtcctccagggccccccggagcccctggt
actcctggatctggatctccagactcactgcctgacattcgccagtacattactgattat
cttcagagtgattctgtcaggaactacatgactggaccccaaggaccacccgggccacca
ggaccacctgcaggtggcagtgttccggttgatgatctggcgagccgtgtcatcagctac
ctgcaacgcactggcatgagcgccggtgttcctggccctcctggtccacctggaacacca
tcagttgatgctattatagccctattgcagagacaggaagtgaggcagtatcttgtgggg
cctcccggcccgccaggaccttcaggatcgagtgggcttggttctatcaaccagcaggag
ttggccactcgtatcatcaacatcatgaaaagtaggggtctgcaagtcggtttgccaggg
cctcccggacctccaggacccccggggtctacctatggggacatatcggcactgctgcaa
aactcagagtttcgaggatttgttgggccaccagggccccctggaacaccaggaagacct
ggctctcctgggccaatgggcccctctggaattgccactgttagtggaacaggttacagg
ctggaagacatcaaaaactacctgcagaatgtaggtttcagtggccttcctggcccagca
ggcccgcccggtccccaagggcctccaggggtgtctggagggctggtctcctacgctgag
aacacacagaaggaccgcttccgcaccgagctcatccagtacctcaccagtgacagtatg
cggcagttgatatcaggccccccaggccccccgggacctcgtggatttaaaggagagcgt
ggtgactctgggtacagcagagtagagggggggctgagcggaacactggattacactgcc
atggcagttaaagtatcagactacataaagactcagggtctgctgcaggatgtctcttac
agcgtgtctgaacgagtgggacgcccaggacacccgggacccccaggaccccctggaccc
cctggacctccagggtacagccgtgtcattgccgcgtacgggaacgtcacggctgatctc
atgcagttcttcagaacttacggtacaattccaggacctgtgggtccaaagggagataga
ggattcccaggacacaaaggggatagaggtgaaataggactcacagggcagacaggactg
ccaggattaccaggaatccagggagagaagggtgaaaaaggggagcaagtaccggttggc
tggaggaaaaggaggaacattggagtttga
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integrated database retrieval system
