Polyodon spathula (Mississippi paddlefish): 121321822
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Entry
121321822 CDS
T07273
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
121321822 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121321822 (ercc6)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121321822 (ercc6)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
121321822 (ercc6)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
121321822 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
TFIIF_beta
SesA
Spt5-NGN
Motif
Other DBs
NCBI-GeneID:
121321822
NCBI-ProteinID:
XP_041116988
LinkDB
All DBs
Position
10:complement(9859563..9882324)
Genome browser
AA seq
1473 aa
AA seq
DB search
MMPLWQRKDVGALKKPSDLEMPVGGTEDQSSSTLSNPNSATNLQEPEIKQEHGYNGESLD
CSFPSTSGAEKPSFSFTEVAVEVSKKAQPSLQIDRQQIQAVERSDQAAELQGLGVDVYDQ
DVLEQGVLQQVDRAISEANQAAKRAEAEKEYEELLDELRSCSAALKHVNKIIEQLAPHAA
TSKDIHRKIESVKRQKENKEKQLKKIKAKQKRLHVVLGGEDSENIEAELQDEEDEEPGPS
CLGSMLMPAQETEWEELIRTGQMTPFGTKIPQKQEKKEPRKIMLNDISGFEKYLADQDKI
AVERKKPHVGKMAKKTTGTKADHKKRTSQEKSKENGKMSSKDKQLKKRLQRLQNNALKMK
FKAGVKEEKHVHTPKSKFKGDHGSESDESEYVPSDELFDPEKEDELYIDGDEEFELKPYA
KKKQLAARKPKEENDSDYFPSSSDDEDPKKKSHMKRCKDDGNIELYKQRIRRWKRQRLRE
KEERRVAGEEDSEDSDAEFDEGFKVPGFLWKKLFKYQQTGVRWLWELHCQQAGGILGDEM
GLGKTIEIIAFLAGLSYSKIRTRGSNYRYAGLGPTVIVCPATVMHQWVREFHTWWPPFRV
AVLHDTGSFTSQKNKLIPEIVACHGILITSYSYIRIMQDYIQKYDWHYVILDEGHKIRNP
YAGVTIACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPIFMEQFSVPITMG
GYSNASPVQVQTAYKCACVLRDTINPYLLRRMKADVKKNLSLPDKNEQVLFCRLTDVQRQ
VYQNFIDSGEVYKILNGDGKVFSGLIALRKICNHPDLFSGGPKILKGMPDDQLTEEEHFG
FWKRSGKQIVVETLLRLWHKQGHRVLLFSQSRQMLDILEIFVRENGYSYRKMDGTTTIAS
RQPLVREYNEDTSIFVFLLTTKVGGIGVNLTGANRVIIYDPDWNPSTDIQARERAWRIGQ
EKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLSSPDGS
QGTETSAIFEGTGSMVEVPKRLKKAKKTKPSTPTRNFLKQNTCTSQHKMRETLEVSLSDK
AENVGANGSKVTMTEHENVTIANENGSYNDGFKEETNTSVIEQALASSDNCGQAADVPSN
NVQNTIKLHSDPDKICPQKQKEKKKHCTAEGEKQLSEAAAHKHRKYKRSEDARFEGHRIP
HLVKKRRHNKDDDTEANEDRKKSDDYVLEKLFRKSGIHSVIKHDSIMEASNPDYVLVEAE
ANRVAKEALKALKVSRQRCLGASSGVPTWTGNNSLPGTPAGGKKRFGQKKNPMLAVPTSV
TTTTPEKCKDASFIKKSGVKKHSSGDHFSGEGIEEESSSTALSSSALLAKMRARNHMTLS
QAIEDEEDQNIQQASSAPLAPTEHDELLVDLRNFIAFQAEVDGQATTQEVLQEFSPKLSA
SQAVVFRELLRNICNFHRNPGKEGVWKLKPEFR
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctttgtggcagaggaaagacgtgggagctctgaagaaacccagtgatctagaa
atgccagtaggtggtacagaggatcaaagcagctccacattgtcaaaccccaacagtgct
accaacttacaagagccagagataaaacaggaacatgggtacaatggtgaaagtctggac
tgttcctttccaagcaccagtggtgctgaaaagccgtcattttcctttactgaagtggca
gtggaggtgtctaaaaaggcacagccctcattgcagattgacaggcagcagattcaggca
gtggagagaagtgaccaagctgcagagctgcaagggctgggagttgacgtgtatgaccag
gatgtgttggaacaaggggtgctccagcaggtggacagagcaataagtgaagcaaaccag
gctgccaaaagagcagaagctgaaaaggagtatgaagagcttttagatgaattgaggtca
tgttcagccgctttaaagcatgtcaataagattattgaacagcttgctcctcatgctgcc
accagcaaagatatccatcgaaaaattgagtctgtgaaacgacagaaagaaaacaaggag
aagcagcttaaaaagataaaagccaaacaaaagcgtctccatgtggttctcggcggtgaa
gatagtgagaacattgaggctgaattacaagatgaggaggatgaagagccgggaccctcc
tgccttggcagtatgttaatgccagcacaggaaacagaatgggaggaactaattcggact
ggccagatgaccccttttggcacaaagattccccaaaagcaggagaagaaggagccccga
aagatcatgcttaacgacatctctggctttgagaagtacctggcagatcaggacaagata
gcggtggaaagaaaaaagccacatgtcggcaagatggcaaagaaaacgactgggaccaaa
gctgaccacaaaaagaggacctcccaagagaaaagcaaagaaaatggaaaaatgtcaagc
aaagataaacagctgaagaagcgcttgcagaggttacagaataacgcactgaaaatgaaa
tttaaagcaggagttaaggaagagaagcatgtgcacaccccaaaaagcaagttcaaggga
gaccacggatctgagagtgatgagtcagagtatgtgccaagtgatgagttgtttgatcca
gagaaagaggatgagttatatattgatggtgatgaagaatttgaactgaaaccatatgca
aaaaagaagcaacttgctgcaaggaaaccaaaagaagaaaatgattctgattattttcct
agcagttcggacgatgaagaccccaagaaaaagagtcacatgaaaagatgtaaagatgac
gggaatattgagttgtataagcaaagaataaggaggtggaagcggcagagactcagagag
aaagaggagcgtagagtggcaggtgaagaagactctgaagacagtgatgcagagtttgat
gaaggcttcaaagtgcccggattcctctggaaaaagctgtttaagtaccaacagacaggt
gtcaggtggctatgggaattgcactgccagcaggcaggaggaattctgggagatgagatg
ggattgggtaagaccatcgagataattgccttcctggcaggcctgagctacagcaagatc
aggacgcgtggatcgaattacagatatgctggattgggtcctactgtgattgtctgtcca
gccacagtgatgcaccagtgggttagagagtttcacacatggtggcctccatttagagtt
gctgtcctccatgatactggctctttcactagtcaaaagaacaaacttatccctgaaatt
gtggcctgccacgggattctgatcacctcctattcctacattcggattatgcaagattac
attcagaaatacgactggcactatgtgattcttgacgaggggcacaaaatacgtaaccca
tatgcaggtgtaacaattgcatgtaaacagttccgcacaccacatcgcttcattctttct
ggttctccaatgcagaataacttgaaagaactctggtccctgtttgattttgttttccca
ggaaagttaggaacacttcctatctttatggagcagttttcagtccctattactatggga
ggatattcaaatgcatcgccagttcaggtgcagactgcatataaatgtgcttgtgttcta
cgagataccataaacccatatcttcttcgaagaatgaaggcagatgttaaaaaaaatctc
tccttaccagacaaaaacgaacaggtgctcttttgtcggttaacagatgtccagcgccaa
gtctaccaaaacttcattgattccggtgaagtttataagatcctgaatggagacggaaag
gttttctctggcctgattgccttgaggaagatctgtaatcaccctgacctattttctggt
ggccctaaaatcttgaaaggaatgcccgacgatcaattaacagaggaagaacattttggc
ttctggaagcggtctggaaagcagatagtggtggagactctgcttcgcctttggcacaag
cagggccatcgagtgttgctcttttcacagtcaagacagatgctggatatcctggagata
tttgtcagagaaaacggctattcttaccgcaaaatggatgggaccacaacaatagcttca
agacagcctcttgtaagagagtacaatgaggatacctccatattcgtgttccttcttacc
accaaagtgggtggcataggtgtgaacctgactggagctaacagggttattatttatgat
cctgactggaaccctagtacagacatccaggctcgtgagagagcctggcggataggccag
gagaagcaagtgactgtttacaggcttctgacagctgggactattgaagagaagatctac
cacagacaaatctttaagcagttcctcacaaacagagtgcttaaggacccaaagcaacgg
cgttttttcaagtccaatgacatttatgagcttttcacactgagcagtcctgatggctcc
cagggaactgaaactagtgccatctttgaaggcactggttcaatggtcgaggtaccaaag
aggcttaaaaaagctaaaaagacgaagccatcaacaccaaccagaaacttccttaagcaa
aatacatgcacaagtcaacacaaaatgagagaaactctggaagtgtcattgtctgataaa
gctgaaaatgttggtgctaatggttctaaagtgactatgacagaacatgaaaatgtgacc
attgctaatgaaaatggcagctacaacgatggttttaaagaggaaaccaatacttcagtt
attgaacaggctttggcttctagtgataattgtggacaggctgctgatgtgccatcaaac
aatgtacagaacacaataaaactgcacagtgacccagacaaaatctgtccccagaaacag
aaagagaaaaagaagcactgtacagctgaaggagagaaacagctttcagaggcagcagcg
cacaagcacagaaaatataagcgttcagaagatgccaggtttgaagggcaccgcatacca
catttagttaaaaaaagaaggcacaacaaagatgatgacactgaagctaatgaagatcgg
aaaaagagtgatgattatgtcttggaaaaacttttcagaaagtcaggtatacacagtgtg
ataaagcatgattccatcatggaggcctctaacccagactatgtgttagtggaagcagaa
gctaatagagtggccaaagaagctttgaaggcactgaaggtctcacggcagcgttgcctg
ggagcgtcttctggcgtgccaacatggactggcaacaacagtctaccgggaacaccagct
ggtggaaaaaaaaggtttggtcagaagaaaaaccctatgttggctgtcccaacttcagtt
accacaaccactccagagaaatgcaaggatgcttccttcattaagaaatctggagtgaag
aaacattcttctggtgatcactttagcggggagggaatagaggaagaatccagttccact
gctctatcttcatctgcactactggcaaaaatgagagccaggaaccacatgaccctgtcc
caggccattgaagacgaggaggatcagaatatacagcaagcatcttcagcaccactggct
ccaactgaacatgatgaactgctggtggacttgaggaactttattgcattccaggctgag
gtggatggacaagctacaactcaggaagtactgcaagagttcagtccaaagctgtctgct
tcccaggcagtagttttccgagaattgttaagaaacatttgtaacttccataggaatcct
ggtaaagagggtgtttggaaacttaaaccagaattcaggtga
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integrated database retrieval system
