Polyodon spathula (Mississippi paddlefish): 121321900
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Entry
121321900 CDS
T07273
Name
(RefSeq) PDZ and LIM domain protein 1-like isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121321900
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121321900
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121321900
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Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121321900
NCBI-ProteinID:
XP_041117216
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All DBs
Position
10:19420161..19475927
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AA seq
395 aa
AA seq
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MTQNIRAVVKGPGPWGFRLVGGKDFEQPLTISRVTPGSKAAQANLCVGDMITAIDGEKTE
HMTHLEAQNKIKGCIEEMVLTLNRSETKLWSPMVGDEGKTNPYKMNLSSEPQRPTHFQHA
FSLTHQPLKTSSCQSSPLSPTWGYKAPFASVYAPHKPCSSSSSSFSAPPVLQRRHSTSSI
SSQVRVGPGELKQTARYCPNSPVEVEVPGLKVLHVQFNSPLQLYSQANIMDTLQGQISTV
NPDLVSIESQKPTAKLAIDTESEVYKMLQENQALVEPPRQSASFKVLQEILETDGDVDKP
SGFRSVRAPATKIGSTAGHIEKLPTCDQCGSGIVGVVVKLRDKFRHPECYTCTDCGINLK
QKGHFFVEDKIYCEKHARERVTPPEGYDVVTVFPK
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaacatacgagctgttgtgaaaggtccggggccatggggattcagactggtt
ggagggaaggatttcgagcagcctttaacgatttctcgggtaacccctggcagcaaggca
gcacaagctaacctgtgcgtaggagacatgataacagccatcgatggagaaaaaactgag
cacatgactcacttggaggcccagaacaagatcaaaggctgtatagaggagatggttctt
acactgaacaggtctgaaaccaaactgtggtcccctatggtgggtgatgaaggaaagacc
aacccatacaagatgaacctatcatctgaaccacagagacccacccatttccaacatgct
ttcagtctgacccaccagcccttaaaaacatcttcatgtcaaagcagccctctttccccc
acgtgggggtacaaagctccctttgcttctgtctacgctcctcacaagccatgctcctcc
tcctcctcctccttctccgccccccctgtcctgcagaggcggcacagcacgtcttccatc
agcagccaagtgcgcgtgggccccggagagctgaagcagacggctcgctactgccccaac
agccctgtggaggtggaggtgccaggactcaaagtcttacatgtgcagtttaactcccct
ttacagctctattcacaggccaacattatggatacgttacagggccagatctccacagtt
aaccctgatcttgtcagtatagaatcccagaaaccgacagctaaactagcaatagacaca
gagtcagaggtttacaaaatgctgcaggagaatcaggcgcttgtggagcctcccagacag
tcagcctccttcaaagtcctgcaggagatcctggaaactgatggggatgtggataaacca
tcaggattcagaagtgtaagagctcctgcaacaaagataggctccactgctgggcatatt
gaaaagctgcccacctgtgatcagtgtggatcaggcattgtgggagtggttgttaagctg
agggacaagttccgtcaccccgaatgctacacctgtaccgactgcggcattaacctgaag
cagaagggacacttctttgtggaagacaagatctactgtgagaagcacgccagggagcgg
gtcacccccccggaagggtacgacgtggtcaccgtattcccaaaataa
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