Polyodon spathula (Mississippi paddlefish): 121321905
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Entry
121321905 CDS
T07273
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121321905
03036 Chromosome and associated proteins [BR:
pspa03036
]
121321905
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121321905
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Helicases
121321905
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
121321905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Gly_acyl_tr_C
Motif
Other DBs
NCBI-GeneID:
121321905
NCBI-ProteinID:
XP_041117221
LinkDB
All DBs
Position
10:19606421..19630558
Genome browser
AA seq
705 aa
AA seq
DB search
MPGKIRFDSDEMEMEDSLDSVTVEKHKKHKKEKKSKNEEKPKKKKQAAEEEQPDDECDPP
TPKKKKKDRETTNGDSGKRDRPQETNGSISNGTPLMKLPQSSEESNAESDIEKEKEIIPE
LTPEQKEGAFSNFRISKETISLLKGRGVTYLFDIQSQTFNSVYDGKDVVAQARTGTGKTF
SFAVPLIEKLQSVPVERKKGRSPKVLVLTPTRELAIQVSRDFKDITRKLSVACFYGGTAY
NGQFDSIRNGIDVLVGTPGRIKDHLQNNRLDLSKVKHVVLDEVDQMLDMGFAEQVEEILG
ASYKKDSEDNPQTLLFSATCPHWVYDVAKRYMRPKYEQVDLIGKKTQKAATTVEHLAVSC
HWSQRAAVIGDVVRVYSGSHGRTIVFCETKKEANELAMNASIKQDTQCLHGDIPQKQREV
TLKGFRNGSFEVLVATNVAARGLDIPEVDLVVQCAPPKDVESYIHRSGRTGRAGRPGVCI
CFFQRKEEGQLRFVEQRAGITFKRVGVPTSTDIIKASSKDAVRFLDSVPATAIEYFRVAA
EKLVEERGAVEALAAALAHISGATAIEQRSLLNSDAGYVTMTCTCSVEMHNIGYAWKALK
EQLGEEVDQKVQRMSFLKGKTGVCFDVPADCVKEYQEKWSDSRRWQLSVATELPEREAAM
REGGSSFGRKPFGGGRGGGRGFNRNDRFNNNHRGQKRSFGRAFDY
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgccgggaaagatccgctttgatagtgacgagatggaaatggaagatagcctggactcc
gttacagtggagaaacacaagaaacataagaaggaaaagaaatccaagaatgaagagaaa
cccaagaaaaagaaacaggctgctgaggaagagcaacccgatgatgagtgtgatccacct
actcccaaaaagaaaaagaaagatcgtgaaacaaccaatggagactctggaaagagagac
cgaccccaggaaaccaacggctccataagcaacggaacacccctaatgaaattgccccag
tccagtgaagaatccaacgctgaatctgacattgaaaaagaaaaggaaataattccagaa
ctaactccagaacagaaagaaggggccttctccaacttcagaatctccaaagagaccatc
agtctattgaaaggacgaggtgtgacgtacttgtttgacatccaatctcagaccttcaac
tctgtgtacgatgggaaggatgtggtagcccaggctcgcactgggactgggaagaccttc
tcctttgctgttcccctgatcgagaaactgcagtcagtccctgtggaaagaaagaagggg
agatcaccaaaggtcctggttctcaccccaacaagggagttggccattcaagtgtccagg
gacttcaaagacatcacaagaaagctttctgttgcctgcttttatggtggaactgcctac
aacggacagtttgatagcatccgtaatggaatcgatgtcttggtgggcacccctggtcgt
attaaagaccacctccagaataacaggcttgacctctccaaggtgaagcatgtagtgctg
gatgaagtggaccagatgctggacatgggctttgctgaacaagttgaagaaatcttagga
gcttcctataaaaaagattccgaagacaacccacagaccctgctgttttctgcaacctgt
ccacattgggtgtacgacgtagccaaaagatacatgcggcccaaatatgaacaggttgac
ctcatcggcaaaaagacccaaaaggctgccaccactgttgaacacttggcggtttcatgc
cactggtcccagcgagcagcagttatcggagatgtcgtcagggtctatagtggaagccac
gggaggaccatagtcttctgtgagaccaagaaagaagccaatgaactggcaatgaatgcc
tccatcaaacaggacacccaatgtttgcatggagacattccacagaaacagagagaggtc
acactgaagggcttcaggaacgggtctttcgaagtcctggttgctaccaatgtagctgct
cgtgggttggacattccagaggttgacctggtcgtacagtgcgctcctccaaaggatgtg
gagtcctatatccatcgctctgggcgtacaggcagggcgggccgcccaggggtctgcatc
tgtttctttcagcgcaaggaggaagggcagctgcggtttgtggagcagagagccggcatc
acatttaagagagttggtgttccaacttcaactgacattattaaagcctccagcaaagat
gcagtcaggtttttggattccgtccctgccactgcgatagagtatttccgcgtagcagct
gagaagctggtcgaggagcgaggggcagtggaggccttggctgctgccttggcacatatc
tccggagccacagctattgaacagcgttccttgctgaactccgacgcgggttatgtaaca
atgacatgtacctgctccgtggaaatgcacaacattgggtatgcctggaaggctctaaag
gaacagcttggcgaggaagttgatcagaaggtgcagagaatgagcttcttgaaaggaaag
accggtgtatgctttgatgtcccagctgactgtgtgaaggaataccaggagaaatggagt
gactccagacgctggcaactgtctgtagcgaccgagcttcctgaacgggaagcagcgatg
cgggaaggaggctcaagtttcgggagaaagcctttcggcggcggtaggggtgggggaaga
ggtttcaacaggaacgacaggtttaacaacaaccacagaggccagaaaagaagctttgga
cgagcattcgattactga
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