Polyodon spathula (Mississippi paddlefish): 121322017
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Entry
121322017 CDS
T07273
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03020
RNA polymerase
pspa04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121322017 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
121322017 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121322017 (polr3a)
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121322017 (polr3a)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
121322017 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121322017
NCBI-ProteinID:
XP_041117381
LinkDB
All DBs
Position
10:11712676..11731298
Genome browser
AA seq
1361 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHLQVVSKNLYSQDSSHTPLPYGVLDHRM
GTSEKDRPCETCGKNLSDCLGHYGYIDLELPCFHIGYFKAIIGVLQMICKTCSHIMLSKD
ERKQFWDFLKKPGLTYLQKRGLKKKISDKCRKKNICFNCGAFNGPVKKCGLLKIIHEKYK
TTKKVVDTVVTDFLQSFDIAIEHNKEVESLLGRAQENLNPLVVLNMFRRIPSEDVPLLLM
NLESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYVNSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIDFMRKLVRSGPEVHPGANF
IEQRHTNMKRFLKYGNREKMAQELKFGDTVERHMIDGDIVLFNRQPSLHKLSIMAHIAKV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANMVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRSKVCQIVASILVGKDEKIKVHLPPPAILKPITLWTGKQI
FGLILKPSKTCPVKANLRTKGKQYCGSGEDLCRNDSFVVIQNSELVCGSMDKGTLGSGSK
NNIFYILLRDWGQMEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKHDLLEAG
YKKCNEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSATGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYSCHDQPALSKNELVLTSESILKRSEFLC
CQDSYLQPKVLYQLDRITPTQLEKFLDTCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMT
LKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDVDDDADFARLVKGRIEKTL
LGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHG
EAVVCVSPRENSKSSMYYVLQTLKELLPKIVVQGIPEVSRAVIHIDEKSGKERYKLLVEG
DNLRSVMATHGVNGSRTTSNNTFEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVML
LADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIM
GIPMNIGTGLFKLLHKTDKDPNPPRRPLLFDNSDFHIPIAM
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggaacaatttcgagaaacggatgtggctaagaaaataagccacatctgtttt
ggaatgaaatctgctgaacagatgcggcagcaggcgcacctccaggttgtcagtaagaac
ctgtacagtcaggacagcagccacactcctttgccctatggcgtgctggatcatcgcatg
ggtacaagtgaaaaggatcgtccatgtgagacttgtggaaagaatctttcagactgcctc
ggtcactatggatacattgatctagagcttccttgtttccacattggatactttaaagct
attataggtgtcttgcagatgatttgcaaaacatgctcccacataatgctttctaaggat
gaaagaaaacagttctgggattttttgaagaaaccagggctgacttatctacaaaaacgg
ggtttaaaaaagaaaatatcggacaaatgcaggaaaaaaaacatctgttttaattgtgga
gcttttaatggtccagttaaaaagtgtggcttgttgaagataatccatgaaaagtataag
acgactaaaaaagtggttgatacggttgtgactgattttcttcagtcatttgatatagca
atagagcacaacaaagaagtggaatcattgctggggagagctcaggaaaatcttaatcca
ttggtggtactgaacatgtttagaaggatcccctctgaagatgttcctttgcttttgatg
aacttggagtcagggaagcctgcagatctaattctgacacgattgctggtcccacctttg
tgcatcaggccatccgtggtcagtgatctgaagtccggaaccaatgaggatgatctaact
atgaaactgactgaaatcatctttctcaatgatgtcatcaaaaagcaccgaatgtctgga
gcaaaaacccaaatgataatggaggattgggattttctgcagttgcaatgtgcgctctat
gtcaacagtgagctatcaggaatcccactcaatatggctcccaagaaatggaccagaggc
tttgtgcagaggctcaagggaaaacaaggacggttcagaggaaacctgtctggaaaaaga
gttgatttctctggcagaacagttatttctccagatccaaatctgcgaatcgatgaagtt
gctgtgcctgttcatgtggccaaaatactgacctatcctgaaaaggtgaacaaagcaaac
atagactttatgcgaaaacttgttcgaagtggacctgaggtccatcctggagcaaacttt
atcgagcagcgacatacgaacatgaaaagatttctgaagtatggcaaccgtgagaaaatg
gctcaggaactgaagtttggggacactgtggagaggcatatgatagatggggatattgtg
ctattcaacagacagccatctctgcacaaactcagcattatggctcacatagccaaagta
aaaccacacagaacgttcagatttaatgaatgtgtctgcacaccgtataatgctgatttt
gatggtgatgaaatgaaccttcatctgcctcagacagaggaggccaaagccgaggctctt
gttctcatggggacaaaagccaacatggtaactccaagaaatggagaaccactaattgct
gctatccaggactttctgacaggtgcttatctccttacattgaaagacactttctttgac
cgatcaaaggtttgtcagatagttgcgtccattcttgtagggaaagacgaaaagataaag
gttcaccttccacctcctgcaatcttaaagcccataaccctttggactggtaaacagatc
tttggccttattctaaaacccagtaagacatgtcctgtgaaagccaatcttcgcactaaa
ggcaagcagtattgtggcagtggagaggacctctgtcggaatgactcttttgttgtgatt
cagaacagcgagctggtgtgtggcagcatggacaagggaacgctgggttctggatccaaa
aataacatcttctacatcctgctgagagactggggccaaatggaggctgcaaacgccatg
tcccgtctggccagacttgctccagtttatctgtcaaaccgtggcttttcaattgggatt
ggtgatgtgacccctggtcaggggctgctgaaagccaaacatgacctgctggaagctgga
tataagaaatgtaatgaatacattgaggctctcaacactggcaaattgcagcaacagcct
gggtgcacagcggaggaaacactggaggcacttattttgaaggagctgtctgttatcaga
gaccatgctggtagtgcctgtcttagggaactggacaagagtaacagccccctgatcatg
gcactctgtggttcaaaagggtcattcattaacatctcacagatgattgcctgtgtagga
cagcaagccatcagtgggtctcgagtccctgatggctttgagaacagatccttgccacat
tttgaaaaacactcaaagctcccagcagcaaaaggctttgttgcagacagtttctattct
ggtttgactcccactgagttttttttccacactatggctggccgtgagggtcttgtggat
actgctgtcaaaacagctgaaacaggatatatgcagaggcgacttgtgaagtcacttgaa
gacctgtgctctcagtatgacctcacggtccggagcgccactggtgacatcatacagttc
atctatggaggtgatggattagatcctgcagcgatggaagggaaagatgagcctttggaa
ttcaagagagtgctggataatatcagagctgtttattcctgccacgatcaaccagccctc
agcaagaatgaactggttttgacttcagaatctatcttgaagaggagtgaattcttgtgc
tgccaagatagctacctccagccaaaagttctgtatcagctggacaggatcacaccaacc
cagctggagaagttcttggacacttgcagagacaagtacatgagagcccagatggagcct
gggtctgctgttggtgctttgtgtgcacagagtattggagaacctggcacgcaaatgacc
ctaaagaccttccactttgccggtgtagcttctatgaacatcactcttggtgtacccaga
atcaaggaaatcattaatgcatccaaaaatatcagtaccccaattatcacagcgcacctg
gatgtggatgatgatgctgactttgctcgccttgtaaaaggaagaattgagaaaaccctt
ctaggagagatttcagaatacattgaagaagtcttccttccagacgactgttttattctg
gtgaaattatctttggaaagaataagacttctgaggttggaggttaatgcagaaacggtc
agatactctatctgcatgtcaaagctacgggtaaagcctggagacattgcagtccacgga
gaggccgttgtctgtgtctcgcctcgggaaaacagcaagagttccatgtattatgttttg
cagaccttgaaagaattactgccaaagattgtggtgcaaggtattccagaagtttcaagg
gcagtcattcacattgatgaaaagagtggaaaggagaggtataagcttttggtagaggga
gataacctacgaagtgtcatggcaacacatggagtcaatgggtcaagaacgacttccaac
aatacatttgaggtggagaaaactctgggtattgaagctgccaggtcaactatcatcaat
gagattcagtacaccatggtaaaccatggaatgagtattgatagaagacatgttatgctg
cttgcagacctcatgtcctataagggtgaaattttaggaatcacaagatttggtctggca
aaaatgaaggagagtgttttgatgctggcttcttttgagaaaactgctgatcatctcttt
gatgctgcatattttggacaaaaggactctgtttgtggtgtttcagagtgcattataatg
gggatcccaatgaacattgggacagggcttttcaaacttttacacaaaactgacaaggat
ccaaaccctccaaggagacctctgctttttgataacagtgatttccacattcctatcgct
atgtag
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integrated database retrieval system
