Polyodon spathula (Mississippi paddlefish): 121322070
Help
Entry
121322070 CDS
T07273
Name
(RefSeq) obscurin-like protein 1 isoform X1
KO
K19574
obscurin-like protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121322070
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centrosome formation proteins
3M complex
121322070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
V-set
Ig_6
Ig_5
C2-set_2
Ig_4
V-set_CD47
Izumo-Ig
fn3
Motif
Other DBs
NCBI-GeneID:
121322070
NCBI-ProteinID:
XP_041117499
LinkDB
All DBs
Position
10:complement(29539864..29590959)
Genome browser
AA seq
2524 aa
AA seq
DB search
MDVFGGAPHFLAYPRPLVVQGGTDAVLKCQIAGDPQPAVIWERANKQLHPDGHYRLFEDG
NVYNLIISRVGVEDSGQYICKAKNSIGETYAAATLRVEGEAQEMELQEENRPRFLIKPLS
VRVGRNEDAVFSCKLWGKPRPEIIWEKDGKKLNDIFESAHFSIGHQDGGWFQLKIFQTRS
PDAGVYTCRARNEYGEALAGAVLLVDAGAGHEEEAATRNGYVNGHWKHHQGKRGSRFSGT
HNIEEPAPNSAKVKMFTVSEGKHAKFRCYVTGKPKPEIVWRKDGIVIMSGRRYLLYEDRE
GYFTLKVLYCKQQDNGLYVCAASNTAGQTLSAVHLNVKEPAVRFKQPLNDVEVRERELAV
LECEVSEDTIPTTWYLEDRRLQPGAKYGIEQCGTVRRLTIRDIGADDDGIYLCEMADGGR
SIAEVSVKGTIVRKLPRKVDLLEGENAAFCVEVEEEEMDIHWYKDGLELRETHQTILKSF
GKTHILVFVNATPQDSGIVTFVVGRSKTSSQLRVKAVRQSPPSCPVGVQMNTERSNSVLL
SWVPAHDSRKNPPTGYVLERQEVGSQEWLQCLTTDLASAVEILGDSVPSEADYRFRICSV
NKYGRSGHVEFSSVVHLVPVARIKTPLQDVLVSEGKDAEFSIELSTLVNGTWFLNGSQIQ
EDDRYTIHRSRTEHSLHLKATNPSDNRSEITFIAYGVRDSAMLYVQPPPVKFESLPEMDR
NKKIEAGSPVVLYCELSDANAQVHWYKDGVELHTQEGIHVQSEGTMRRLIIQSADFSHSG
EYRCDAIDDVIKFNVEVEAPRVKFAALSLMDCHKSIESGSPIELCCELSNPNTQVCWYKD
GMELNSQDGFDIQSEGTKRQLVIQSAEVSHSGLYSCDAVDDVFKFNVDVEAPPVKFAALS
EMDRHKSIELGSPIELCCELSNPNTQVCWYKDGMELHPQDGFDIQSEGTKRQLVIQSAEV
SHSGVYCCDAVDDVIKFNVDVEAPPVKFVALSETDRNKSFELGSPIELCCELSNPNTRVR
WYKDGMELHPQEGFDTQSEGSTRRLVIQSAEVSHSGLYSCDAVDDVIKFNVDIEASPVKF
NPLPEADLYKSIVESSPVVLYCEVSRPDAPVRWYKDGIEIQPSDGITVQSDNTMKRLVIQ
SSKLSDSGVYTCHAVDDAVIFNVNIREPPVTVVHPREDVHLEHQVSEQIVLSCELSRSNA
AVHWYKDGQELLESDDVILESEGPHRRLIILHGRPENSGEYVCDTADDSIFYQVTVTEPA
VQIVSPSQSPMELEFLTEECVVLSCEVSRPNADVCWYQDGLELEETEDLILETEGVHRRL
IIPKATVQDSAEYICDAVDDSVTFMVKITEPLVKFVRPHKAPGAVNVFVGDPVVLECEVS
RFNAEVSWRKEGQEMEDSKEVTIEEVGVLRRLTIHSPKLEDSGNYFCDTKDETMNFRVKV
TEAPVQIKRKGELKTQQQVMVSDDVILECELSRANGTIKWYKDGEKITDNERVCLEEEGA
FRSLVILNAETSDSGEYFCDACDDSVVFHVCVKEPPVTIIGNSESPEHHSLIAGDDLVLS
CELSRSNAMVEWYCNGKPISSEDSRIRIETLGSMRQLVISGLRPSDSAEYICNAGDDKMV
TTVTVKEPPVQILNKEDAKESINVVENDSVTLCAQVSKEDAAVQWLKNWRDTSGERYCAS
SDGKSRLFSIHKVQLSDSGVYTCDAFSDEIHFTLQVKAAPIKFERKQEKPEDVFATETEN
TIMSAVLSSDKSEVKWLRHQSQIFDSEKYETRVEGRVHSLIVKNTSKEDCGMYTCISQDD
EMVFVVSVKELKLNFVQSLEEVYAYKDDTIILRCELCKPKGDVQWLKDGQQILPSRHLVM
KAEGRERSLTIHRATGNDTGEYVCESKDDKTCARVTVEMPRVVEVISELHNITVLEGEDA
TLKCVISPEDAELVWRMNGNVVVPDDKFVVSRKGLCHTLTIRDCQLTDSSKVTAEAEGVV
SKANLQVQEAQVLFTKKMEAVIAEEHGEATLEVEISLESGEVQWMRQGVVIQPSPKFTLS
AKGRKRSLTVHNLTFSDRGTFRCETLHDRTQGKLNVEPRKISIKKALTDTETLERETASF
EVEVSHVDVQGVWQKDGIRIKPNNSWRVSTHGRVHALTLSNLTLEDSGTITFSAESVRTS
ARLTVKEPPVMFLRALEDLRIPESSGASFECELSRQNVDVKWLKNGEELKPGKNYRIYSM
GRKRFLQITKCGIADSGTYTCDAVDSKVTAVLDVYEREVEIVQGLQDVGIQEDENAVFMC
EVSVENVKGEWLRNGEKIRPTSNVRIRQEGNKHFLLICNVKAEDSGKITFVAKQAESTAD
LEVEELPVQIVKPLRDKTALEKHRVILECTVSNPRCSVRWYQGETLILPSDHYEICSEGC
YRKLVIHHVTAMDEGTYSVQVGEHESSARLLVEEQAILVVRQLEDVEVKAPEEACFECEI
SVPVVKPPQWSLNGAPLQNGNGVRIENAGTVHRLILKETSSEMVGIVKFTAGKARTSARL
SIKC
NT seq
7575 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgtttggcggtgccccacacttcctggcataccctcgccccctggtggtgcag
ggtggcactgacgccgtgctgaagtgtcagattgctggggacccccagccagctgtcatc
tgggagcgagctaataagcagctccaccctgatggacattaccgcctctttgaagacggc
aatgtctacaaccttataatttccagagtgggggtcgaggacagtgggcaatatatctgc
aaggccaaaaacagcattggtgagacctatgccgcagctacacttagggtcgagggagag
gcacaagagatggagctacaagaggagaacaggcctcgcttcctcatcaagcctctctca
gttcgagtcggccgaaatgaagatgctgtcttctcctgcaagctgtggggcaagccccgg
ccagagatcatctgggagaaggatggaaagaaactgaatgatattttcgaaagtgctcat
tttagcatcggccaccaggacgggggctggttccagctaaagatctttcagacccggtcc
cccgatgcaggagtttacacctgccgggccaggaatgagtatggtgaagcactggctgga
gcggttttgttggtggacgccggggcaggacatgaggaggaggcagcaacccgtaatggg
tacgtcaatggtcactggaagcaccatcagggaaagcgtggttccaggtttagcggcact
cataatatcgaggagcctgcgcccaactcggctaaagtgaaaatgttcacagtttcggaa
ggcaagcatgccaagttccgttgctatgtcacagggaaacccaaaccagagattgtgtgg
aggaaggatggcattgtgataatgtctgggaggcggtatctgttgtatgaagatcgggaa
ggctacttcacactgaaagttctctactgtaagcagcaggacaatgggctttacgtctgt
gctgcctccaatacagcaggacagacccttagtgctgtgcatctcaacgttaaagagccg
gcagtgcggttcaagcagcccctgaatgacgtggaggtgcgtgagcgagagctggctgtg
ctggagtgcgaggtctctgaggacaccattcctaccacctggtatctggaagatcggcga
ctgcagccaggagcaaagtatggcattgagcagtgtggtacagtgcgccgactcaccatc
cgagatattggggcagatgatgatggaatctatctctgtgagatggcagatggagggagg
agtattgctgaggtgtctgtcaaaggtacaattgtgcgcaagcttccacggaaggtggat
ttattagaaggggagaatgccgctttctgcgtggaggttgaggaggaagagatggacatt
cattggtacaaagatggactagagcttcgagagacacaccaaactatccttaaatccttt
ggcaaaacccacatcctcgtctttgtcaatgcaacacctcaagactcagggattgtgact
tttgtagtgggaagatccaagacttcttctcagctccgtgtcaaggcggtccggcagtct
ccacccagttgcccagtgggtgtgcagatgaacacggagcgttcaaactcagtgttgctg
tcctgggtcccggcacacgattcacgcaagaacccccccacagggtacgtgctggagagg
caggaagtgggatcccaggaatggttgcagtgtctgaccacagacctagccagtgcggtg
gagatcctgggcgacagcgtgccctctgaggcagactaccggttccgcatttgcagtgtc
aataagtacggcaggagtggccacgtggagttctcatcagtcgtccacctagtgccagtg
gctcggataaaaactcctcttcaggatgttctggtgtctgaaggcaaagatgctgagttt
tccatcgagctgtccaccctggtgaacgggacctggtttttaaatggctcccaaatccag
gaggatgataggtacaccatacaccgttcccggacagagcattcattgcatctgaaagct
acaaatccatctgataacaggtctgaaatcaccttcattgcctatggagtaagggactcg
gcgatgctctatgtgcaacctccaccggtgaagtttgagtctctaccagagatggaccgc
aacaaaaaaattgaagcaggcagccctgttgtcctgtactgtgaactgtcagacgccaac
gcgcaggtccattggtacaaggatggggtagagttacatacacaagaaggaattcacgtc
caatcagaaggcaccatgaggaggctgatcatccaatcagcagatttctctcattctggg
gagtacaggtgtgacgccattgatgatgtcatcaaatttaacgtggaagttgaagctcca
cgggtgaagtttgcagcactttcgttgatggactgccacaaaagcattgaatcgggcagc
cccattgagctgtgctgtgaactgtcaaaccccaatactcaggtctgctggtacaaggat
ggaatggagctcaactcacaggatgggtttgacatccaatcagagggcactaagaggcag
ctggtcatccaatcagcagaggtctcccactctgggctgtatagctgtgacgctgttgat
gatgtcttcaaatttaacgtggatgttgaagctccacctgtgaagtttgcagccctgtca
gagatggaccgtcacaaaagcattgaattgggcagccccattgagctgtgctgtgaactg
tcaaaccccaatactcaggtctgctggtacaaggatggaatggagctccacccacaggat
gggtttgacatccaatcagagggcactaaaaggcagctggtcatccaatcagcagaggtc
tcccactctggggtgtattgttgtgatgctgttgatgatgtcatcaaattcaatgtggac
gttgaagctccaccagtgaagtttgtagccctgtcagagactgaccgcaacaaaagcttt
gaattgggcagccccattgagctgtgctgtgaactgtcaaaccccaatactcgggtacgc
tggtacaaggatggaatggagctccacccacaggagggctttgacacccaatcagaggga
agcacaaggaggctggtcatccaatcagcagaggtctcccactctgggctgtatagctgt
gacgctgttgatgatgtcatcaagtttaacgtggacattgaagcttctcctgtgaaattt
aatccacttcctgaagccgacctctacaaaagcattgttgagtcctctcctgtggtactg
tactgtgaggtgtctcgccccgatgctcctgtgcgctggtacaaggatggaattgaaatc
caaccaagcgatggcattactgttcaatctgacaacacaatgaagcgactggttatccaa
tcatcgaaactctcagactctggggtttacacctgccacgcagtagacgatgcagtgatt
ttcaacgtgaacattcgagagccacctgtgactgtagtacatccaagggaggacgtccat
ctggagcaccaggtttccgaacaaattgttttgagctgtgaactgtcccgctccaatgca
gctgtgcactggtacaaggatggccaggagctcttggaaagtgacgatgtcatcctggaa
tctgagggacctcacaggagactaattatcctccacggacgccctgaaaattctggggag
tacgtttgtgacacagcagacgactccattttctatcaggttacagtgactgaacctgca
gtccagatcgtttcccccagccagtcccccatggagttagaattcctcacagaagagtgt
gtggttctgagctgcgaggtctctcgacccaatgcagatgtgtgctggtaccaggatggg
ctggaattagaggagacggaagatcttatcctggagaccgaaggagtccacaggaggctc
attatccccaaggctacagtccaagactctgctgaatacatctgtgatgcagttgatgat
tcagtgaccttcatggtgaaaattacagagccactagtgaagtttgtgcggcctcacaaa
gcccctggggctgtgaacgtttttgtgggagaccctgtggtgctggagtgtgaggtctcc
cgttttaatgcggaggtgagctggcggaaagagggacaggagatggaggacagtaaagag
gtcaccatcgaggaggttggagttctccggcggctgaccatccactcccccaagctggag
gattctgggaattacttttgtgacaccaaagacgagacaatgaatttcagagtgaaagtt
actgaggcaccagtgcagatcaagcggaaaggggaactgaagactcagcagcaggttatg
gtttcagacgatgttatcctggaatgtgagctctcgcgagccaatgggaccatcaagtgg
tacaaagatggagagaaaatcacagataatgagcgtgtctgtctggaggaggagggtgct
ttccgctcgctggtcatcctgaacgcagagacctcagactcaggggaatacttctgtgat
gcttgtgacgacagcgttgtgttccatgtctgtgtgaaagagcctccagtgaccatcata
gggaattctgagagccctgagcaccacagtctgattgctggtgatgaccttgtgttgtcc
tgtgaactctcccggtccaacgccatggtggagtggtactgcaatgggaagcccatatcc
tcagaagactctcgtatccgcatagagaccctcggatcaatgcgccagctggtcatctca
ggccttcgaccctcagattcagccgaatatatctgcaatgcaggcgatgacaaaatggtt
accacggtaactgtaaaagagccgcctgttcaaattctgaacaaagaagatgcgaaggag
tcaattaatgttgtggagaacgacagcgtgacgctgtgtgcgcaggtttccaaggaagac
gccgcggttcagtggttaaaaaactggagggacacgagcggggaacgctactgcgcaagc
agtgatgggaagtcccgcctcttcagcattcacaaagtgcagctgtcagacagtggagtg
tacacatgcgacgccttcagcgatgaaattcacttcaccctgcaggtcaaagcggctccc
atcaagtttgaacgtaaacaagaaaagccagaggacgtgtttgccacagaaactgaaaac
accatcatgtcagcggtgttgtcaagtgataaaagtgaggtgaagtggctccgtcaccaa
agccagatctttgacagtgagaagtacgagacgagggtggagggcagagttcacagcctc
attgtgaagaacacatccaaggaagactgcggcatgtatacctgcatctctcaggacgat
gaaatggtgtttgtcgtcagtgtgaaagagctgaagttgaactttgtccaaagtttggaa
gaggtctacgcttacaaagacgacacaatcattctacgttgtgaactctgcaaaccaaag
ggagatgtccagtggctgaaagacggccaacagatccttcccagtagacatcttgttatg
aaggccgagggtcgcgagcgctcactgaccattcaccgtgctacaggaaatgacaccggg
gagtacgtctgtgaatccaaagatgacaaaacatgtgctagagttactgtggagatgcct
cgggtggtggaggtcatctcagaactgcacaacatcactgtgctggaaggggaagacgcc
acattgaagtgtgtcatctcaccagaagatgccgagctggtgtggcgcatgaacggcaat
gtggttgttccagatgacaagtttgtggtgtccagaaaagggctgtgtcacacactgacc
atccgggactgccagcttacagacagctccaaagtgactgctgaggccgagggggtggtg
tcaaaggccaaccttcaggttcaggaagcgcaggtcctgttcacaaagaagatggaagcc
gtgattgcagaggagcatggtgaggccacgctggaagtggagatcagtctggagtcaggg
gaggtccagtggatgagacagggtgtggtcatccagcccagccccaaattcacactgagt
gcgaaagggaggaagcgcagcctcactgttcacaacctcaccttctcagaccggggcacc
ttccgctgtgagactctacatgaccggacacagggcaagctcaacgtggagcccaggaaa
atctcaatcaagaaagccctgacagatacggaaacgttagagcgggagacggcctcgttt
gaggtggaggtttcgcatgttgatgtgcagggggtgtggcagaaggacgggatccgcatc
aaacccaacaatagctggcgagtcagcacccacgggagagtacacgcactcaccctgtcc
aacctcacactggaggacagcggcaccatcaccttcagtgcggagagcgtgagaacatca
gcgagactcactgtgaaagaacccccagtgatgttcctgagagctctggaggatctacgg
ataccagaaagctctggagcatcgtttgagtgtgagctgtccaggcagaatgtagatgtt
aagtggctaaagaatggagaggaactgaaaccagggaagaactatcgcatttactcaatg
gggaggaagaggtttcttcagataacgaagtgcgggatcgcagattcagggacttacacc
tgcgacgctgtggacagcaaagtgaccgctgtcttggacgtctacgagcgggaggtggag
atagtgcaaggactgcaggatgttggtatccaggaagacgagaacgctgtatttatgtgc
gaggtgtcagtggagaatgtgaagggagagtggctgagaaacggggagaaaatcaggccc
accagcaatgtcagaattcgccaggaagggaataagcacttcctcctgatttgcaatgtg
aaggcagaggattctgggaagattacatttgttgctaaacaagcagaatccacagccgac
ctggaagtggaagagctcccagtgcagatcgtgaagcccctacgtgataagaccgccctg
gagaagcaccgcgtgatcctggagtgcaccgtgtcgaacccgcgctgcagtgtgcgctgg
taccaaggagagactcttatcctgccctcagaccactatgagatctgcagcgagggctgc
taccgcaaattggtcatccaccacgtcactgccatggatgaggggacttacagtgtccag
gttggggaacatgagtcctctgcacgcctgttagtggaagagcaggctatcctagtggtg
cgacagctggaggatgtggaagtgaaggccccggaagaggcctgctttgagtgcgagatc
tccgtgcccgtcgtcaaaccaccccagtggagcctgaacggggcgcccctgcagaatggg
aatggggttcgaatagagaatgctggcactgtgcacaggctcatcctgaaggagacttcg
tctgaaatggtcggaatcgtcaaattcacagccgggaaagcccggacaagcgcgaggctc
agtatcaagtgttga
DBGET
integrated database retrieval system
