Polyodon spathula (Mississippi paddlefish): 121322071
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Entry
121322071 CDS
T07273
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121322071
00535 Proteoglycans [BR:
pspa00535
]
121322071
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121322071
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121322071
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121322071
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121322071
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
121322071
NCBI-ProteinID:
XP_041117502
LinkDB
All DBs
Position
10:29670216..29789386
Genome browser
AA seq
1694 aa
AA seq
DB search
MAKFENMLGCSLLLLACVSYSDAQWRWWLFGKDAQATTQTSATQEKQGIQTTTSEATSLE
TTTVILQAHEEGLLSVSTRSPDSEAVSPTTGPPPPGPVTEENLAGVGAQILNVAEGILSF
VQTWDQKPTAGAKNDAVEVSTSPAEDKETTTDGHKMDRGTTLPIARQVTEQPKDVATFLP
VTKPWVEHHLLENGTTTLHTKLLLENLPEVNLESSGEGESVSSMGESQSEAGQLEMGNLT
SSFSNITSGEFLQVDNISDWRDSMTNESLHDVKAVAGFVKMQLSDNLTDFANWTTAGNGT
SNTGNQIEDDVGVSLLQLIGDPPPEEITKIYGPDNSPGYVFGPDANTGQLARAHLPSPFY
RDFSLLFHLQPTTPNAGVIFSITDPTQASMYVGVKLSAVQAGKQKVLFYYTEPGSQTSYQ
AAAFNVPSLANRWTRFAISVEGEEVFFFLDCEESEATRFERSPDEMELESGAGVFVGQAG
GADPDRFVGVIAELRLVGDPRAAERHCDEDGDDSDAASGDFGSGYEEKPKIETVTPPAQR
PLKQPPVTAPSTGRKEKLSPQTTAETARKQIVDSQTHSEVKSQPVVPGQAGPTGPAGPKG
EQGEKGDRGERGPQGAKGESVGAAGGTAGPRGEKGENGMKGSAGFGYPGKKGDTGDPGPP
GPPGPPGPAAERVERGDGSVVEKIVGARGPPGPAGPPGPKGADGEPGDPGEDGIAGPAGP
PGFPGIPGDPGQKGEKGDPGEGKPGPRGPPGLPGPAASRSQTFFDMEASGFPDLDSIRGP
QGLPGIPGPPGPPGPPADPSLSSGRPALIGPPGPRGIDGKDGIPGAQGPPGPPGPPGNNG
QPGLIGPRGEKGDAGDLGLPGAVGEKGTFPPVPPYLLELLSHYSSSSSTGVPGFEGSRGD
VGPPGVSGQTGLAGLPGPMGPVGPPGPPGPPGPGFPVGFDDMEGSAFGLINVPGVRGPVG
QPGIPGPPGLPGIPGNNGLPGLPGAKGEDGSPGFSGVDGRPGLDGFPGLEGPKGDKGDRG
EKGEQGRDGVGIPGQPGLPGPPGQIIYQSGNGIPGPPGQAGFPGPRGPKGDRGDSGPPGY
GIKGEKGEPAAIIGPDGNILSSAFLGGLGGEKGDPGVPGPVGPVGPYGRPGQKGEIGLPG
RPGRPGINGFKGEKGEPSDVHSGYAVSGPPGPPGPPGPPGPPGQFTERYDYNEAVPRYPG
LQGPKGERGFPGYTGEKGEQGQPGLPGQSGGLPDFDIYALKRELKGEQGDKGVQGEKGEP
GGGYYDPRYSASQGPPGQPGSPGLPGPKGDSIQGPPGPQGPPGTPGVGYDGRPGQPGPPG
PPGPPSLPGAFRQSISIPGPPGPQGPPGPPGQSSGQVTILRTYQTMITTARGLPEGTMIF
VSDKADIYIRVRDGFRQVLLGDYTPFFGGGVLENEVAAVQPPPVVHFSQGHSPNSGAGHI
SQNEPVNRQPEQRPHWPHPPHQPDQGHVVYPSTPERQPAGRNPARPEFSYPSYPSPPHRR
PSQPEITQPAGHEHGTGPALHLIALNAPQTGDMRGIRGADFQCFQQARAVGLTGTFRAFL
SSKLQDLYSIVRRADRATLPIVNLRDEVLFDNWESLFDGSDAQMKPNVAVYSFDGRDVLR
DNTWHQKMVWHGSNNKGHRLTDNYCETWRTGDQAVTGFASSIQAGRLLQQRPSSCTSSHI
VLCIENSYILQSKK
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggctaagtttgagaacatgttgggttgctccctgctcctgttagcttgtgttagttac
tctgatgcccagtggagatggtggctatttggcaaagatgcccaggcaactacacagacc
tcagcaacccaggagaaacagggaatacagactactactagtgaggctacaagcctggag
accaccacggtcatcctacaagcccacgaagaaggacttttgagtgtttcaacaagaagc
cctgattcagaagcagtttctccaactacaggaccaccaccaccagggccagtgaccgaa
gagaaccttgctggagttggggctcagatactgaatgtggctgaagggatcctcagcttt
gtccagacgtgggaccaaaaaccaacagcaggagcaaaaaacgatgcagtagaggtttct
acctcccctgctgaagacaaagagacaacaaccgatggacataagatggataggggcaca
actttgcccattgctaggcaggttacagagcagccaaaggatgtagccacatttctacca
gttaccaaaccttgggtggaacatcacttgctagaaaatggtactacaacccttcatacg
aaattgttgttggagaatttaccagaagttaatttggagtcgtcgggggaaggggagagt
gtgtcctcaatgggagagagccagtctgaagctggacaactggaaatgggaaacctcaca
tcttcttttagcaatatcacaagtggcgagtttttgcaagtggacaatatctcggactgg
cgggattcgatgaccaatgagagcttgcatgatgtgaaagcggtggcgggctttgtaaag
atgcaactatccgacaatttaacagactttgccaattggacgactgcagggaatggtact
agcaacacgggtaaccaaattgaagatgatgtaggtgtatccttactacagttgataggc
gacccgcctccagaagaaatcaccaaaatctacggtccagacaacagccctggctatgtg
ttcggcccagatgccaacacaggccagctggctcgtgctcaccttcccagtcccttttac
cgggacttctcgctcctcttccacctgcagccgaccacccccaatgctggtgtgatcttc
tccatcacagaccccacacaggcatccatgtatgtgggtgtaaagctgtctgctgtccaa
gcaggcaaacaaaaggtcctcttctactacacagagccagggtcccagacctcctaccag
gcagcagccttcaatgttccatcgctagccaaccgctggacacgcttcgccatcagtgtg
gagggtgaagaggtgttcttcttcttggattgtgaggagtctgaagcaacccgtttcgag
cgttcacccgacgagatggagttggaaagtggcgcaggggtctttgttggtcaggctgga
ggagcagatccagaccgatttgtgggtgtcattgctgagctcaggctagttggagatcca
agagctgctgagagacactgtgatgaagatggagatgattctgatgctgcctctggtgat
tttggaagcggatacgaggagaaaccgaaaattgaaacggtgacacctcctgcccagaga
ccactgaaacagcccccagtgacagcgccctctacgggaaggaaggagaagctctcacct
caaaccactgctgagactgctaggaagcagatagtcgactctcaaactcattctgaagtg
aaatcccagccagttgtcccaggtcaagctggtcctacaggcccggccggtcccaaagga
gagcagggggagaaaggcgatcgaggtgaaagagggccccagggtgcaaaaggagagagc
gtgggggctgcagggggcactgctggccctcgtggtgagaagggagaaaatggcatgaag
ggaagtgctggctttggctaccccggcaagaagggagacactggtgaccctggcccccca
ggacctcctggtccccccggcccggccgcggagcgggtggagcgtggagacggcagtgtc
gtggagaagatagtgggagcaagaggaccccctggaccagccggcccaccgggacccaaa
ggagcagacggagagcctggtgaccctggtgaagatggcattgcaggtcctgctggccct
cctggctttcctgggattccaggggaccctggccaaaagggcgagaagggcgaccctggt
gaaggcaaacctggaccaagaggaccccctggcttgccaggaccagcggcgtcccgctca
cagaccttttttgacatggaagcttccggattccctgatctggacagcattcggggcccc
caagggcttcctggtattccaggccctcctggtcctcctggcccccctgcagaccccagc
ctgtcatctggacggcctgctttaattgggccacctggaccaagagggattgatgggaag
gatggcattcctggtgctcaagggcccccaggccccccaggtcctccaggaaataatggc
caaccaggactgattggacccagaggagaaaagggtgatgcaggcgatttgggacttcct
ggagctgttggtgaaaagggcacctttcctcctgttcctccctacctcttagaactgctc
tcccattattcatcatcttcttccactggggtgcctgggttcgagggttcaaggggtgat
gtgggtccccctggtgtttcagggcagacaggactggctggtcttcctggaccaatgggg
ccagttggaccacctggcccccctggacctccaggcccaggcttcccagtgggctttgat
gatatggaagggtcagcattcggtttaataaatgttccaggagtcagagggccagttgga
caaccgggtattcctggtccacctggtttgccaggcataccgggtaacaatggattgcct
ggtcttccaggagcaaagggagaagatggttctccagggttctcaggggtagatggacgg
ccagggttagatggattccccggtctggaaggaccaaagggtgacaaaggggacaggggc
gaaaaaggcgagcagggtcgagatggggttggaattcctggtcagcccggcctacccgga
cctcctggacagatcatctatcagtcaggcaacggaataccaggcccacctggtcaagca
ggttttccaggcccgaggggaccaaagggcgacagaggagactcgggaccaccaggatat
ggaataaagggagaaaagggagaacctgctgccattatcggtcctgatggaaatatcctg
agcagtgcatttcttggtggacttggaggagaaaagggtgacccaggagtccctggaccg
gttggccctgtgggtccttatggtcgccctggccagaagggtgaaattggtttacctggc
aggcctggtcgtcctggcattaatggatttaaaggtgaaaagggggagccaagtgacgtc
catagtggttacgctgttagcggtccccctggcccccccgggccccccggcccccctggt
cctccaggacaattcactgaacgctatgactataatgaagctgtaccaagatatccaggt
ttacaaggtcccaagggagagaggggcttcccaggctacacaggagagaaaggagagcaa
gggcagcctggcctgcctggacaatcaggtggtctcccagactttgatatttatgcatta
aagagagagctgaagggagaacaaggtgacaagggagtgcagggtgagaagggagaacca
ggcggtggatactatgaccctcgttattctgcatctcaaggtccccctggacagccgggt
agccctggactgccgggtcctaagggtgactctatccaaggccctcctggtccccaggga
cctccaggaaccccaggggttgggtacgatgggcgtccaggacaaccaggcccgcctggc
ccacccggacctccatcgctgcctggagctttcaggcagagtatcagtattccaggccca
cctggaccccagggccctccaggccctcccggacagtcctccgggcaggttaccattttg
aggacttaccaaaccatgatcaccacagcgcgaggactgccagaaggaactatgatcttt
gtctcggacaaggcagatatctatatccgagtgcgggatggatttcgtcaagttctgctt
ggggactacacaccattctttggaggcggtgtccttgaaaatgaagtggccgcggtgcag
ccaccaccggtagtgcatttctcacaaggccattcccccaacagcggggctggacacatt
tcccagaatgaacctgtaaacaggcagccagagcaacgaccacactggccgcatcctccc
catcagccagaccagggccatgttgtctaccccagcaccccggagcgacagccagcaggg
aggaacccagcaaggccagaattcagctatcccagttaccccagccccccccatcgaaga
cccagccagcctgagattacacagcctgcaggtcatgaacatggcacaggccctgctctc
catctgatagccctgaacgctccccagactggagacatgcgtggaatccgtggagcagac
ttccagtgcttccagcaagcccgagcagtgggactgaccggtactttccgtgcgttcctg
tcttccaaactccaggacctttacagcattgtgcggagagctgacagagccacgttgccc
atcgtcaatctcagggatgaggtgctgtttgataactgggagtcactgtttgatgggtcg
gatgctcagatgaagcccaatgttgcagtctactcctttgatgggcgggatgttctcaga
gacaacacctggcaccaaaagatggtctggcacgggtcgaacaacaaaggccatcggctc
actgacaattactgcgagacttggaggactggtgaccaggccgtgacgggttttgcttcc
tccattcaggccggcaggcttctccagcagcgccctagcagctgcaccagctcccacatc
gtcctgtgtatcgagaacagctacatcttacaatccaaaaaataa
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integrated database retrieval system
