Polyodon spathula (Mississippi paddlefish): 121322223
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Entry
121322223 CDS
T07273
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 2 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04145
Phagosome
pspa04814
Motor proteins
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121322223
09142 Cell motility
04814 Motor proteins
121322223
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121322223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121322223
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121322223
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
121322223
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
121322223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WDR55
Beta-prop_EML
Dynein_IC2
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD40_RFWD3
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
121322223
NCBI-ProteinID:
XP_041117797
LinkDB
All DBs
Position
10:complement(36808206..36840317)
Genome browser
AA seq
655 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKEADQKKEVAPPQDDSDLEKKRREAD
ALLQSMGITPDAPVVQPLRVVTADTCLFHYLVPPPMSPSSKSVSTPSEAGSQDSGDGAVG
SRSCDTSALLCHKTTLHWDSDPSVLQLHSDLGRGPLKLGMAKITHVDFPPREVVSYTKET
QTPVVTQQKEEEDEEEETVPLKPVIEPEEEKAVQKEEEEAPPHELTEEEKLQVLHSEEFL
SFFDHSTRIVERALSEHVDVFFDYSGRDLEEKEGEIQAGAKLSLNRQFIDERWSKHRVVT
CLDWSLQYPELLVASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSAAFAKF
HPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTPNAHNLISIST
DGKMCSWSLDMLSQPQDSMELVHKQSKAVAVTCMSFPLGDVNNFVVGSEEGSVYTACRHG
SKAGISEMFEGHQGPITGIHCHTAAGPVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDN
SDYVYDIMWSPAHPALFACVDGVGRLDLWNLNNDTEVPTASITVEGNPALNRVRWAHSGR
EIAVGDSDGQILIYDVGEQISVPRNDEWTRFARTLAEINANRADAEEEAAARLSA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaaaagcgaactgaaagcagagcttgagcgcaagaaacagcgcctggctcaa
atcagggaggagaaaaaaaggaaagaggaggagcggaagaagaaagaagctgatcagaag
aaggaagtggctccaccccaggatgactcggacctggagaagaagcggcgcgaggcagat
gctttgctccagagcatgggcattacacctgacgctccagttgtgcaaccactccgagta
gtaacagcggatacctgtctgtttcactatttagtccctccacctatgtctccatcctct
aagtctgtgagcacgccaagcgaggctggcagccaggactctggtgatggcgccgttgga
tctaggagctgtgacacatctgctctactatgccataaaacgacacttcattgggactct
gatccatcagttctacaacttcactctgatctgggaagaggcccccttaaacttggaatg
gccaaaattacacatgtggatttccccccacgtgaagttgtatcctacacaaaggaaacc
cagaccccagttgtgacgcagcagaaagaagaagaagatgaggaagaggagactgtccca
ctgaaaccggtgatagaacctgaggaggagaaggcagtgcaaaaggaggaggaagaagct
cctcctcatgaactgaccgaagaggaaaagctgcaggttctccactcagaggagtttctg
tctttctttgatcacagcacccgcattgtggagcgggccctttctgaacatgtggatgtg
tttttcgactacagcggcagggatttggaagagaaggaaggagagatccaggctggagct
aagctgtctttaaacagacagttcatagatgaacgttggtcaaagcatcgtgttgttacc
tgcttggattggtcgcttcagtatcctgaactgcttgttgcctcatacaacaacaacgag
gatgccccccatgagccagatggtgtggcccttgtgtggaacatgaaatacaagaaaacc
acaccagagtatgtctttcattgccagtcagcagtgatgtcagctgcctttgcaaaattt
catccaaacctagttgttggtggcacatattctggccagatagttctgtgggataaccgc
agcaacaagaggactccagtgcagaggactccgctctccgctgctgcacacacgcatcca
gtgtactgtgtgaacgtggtgggtactccaaatgctcacaacctgatcagcatctcaacc
gatgggaaaatgtgttcctggagtttggacatgctgtctcagccacaggacagtatggaa
ttggtccacaagcagtccaaggctgtagctgtcacctgcatgtccttccccctgggcgat
gtcaacaactttgtggtgggaagcgaagagggctctgtgtacactgcatgtcgtcatgga
agcaaagctggaatcagtgagatgtttgaaggccaccagggaccgattacaggtatccac
tgtcacactgcagcaggaccagtcgatttctcccacctgtttgtcacctcatcctttgac
tggacagtgaaactgtggacaaccaagaataacaagccactgtactcatttgaggataac
tcagactatgtttatgatatcatgtggtccccagcccacccagccttgtttgcttgtgtt
gatggagtaggccggcttgatctgtggaatctcaacaacgacacagaggtacctacagca
agtataacagtggaaggaaatccagccttgaatcgcgtgagatgggcacattctggcaga
gaaattgctgttggagactcagatgggcagatactcatttatgatgttggcgagcaaatc
tcagttccgcgcaatgatgaatggacacgttttgcccgcacgcttgcagaaatcaatgcc
aacagagcggatgcagaagaggaagctgctgcgcgtttatcagcctga
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integrated database retrieval system
