Polyodon spathula (Mississippi paddlefish): 121322299
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Entry
121322299 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121322299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121322299
Spliceosome [BR:
pspa03041
]
Complex A
U1 snRNP components
U1 related factors
121322299
Complex B
121322299
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
DTW
Motif
Other DBs
NCBI-GeneID:
121322299
NCBI-ProteinID:
XP_041118014
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Position
10:39569966..39593895
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AA seq
897 aa
AA seq
DB search
MMGPPGMPPHFPPMGMPPMGQRPPNMTPMPPGMMPPMMPPMGGPLGQMPGMMPPMMPGMM
MPPHMPAASMQPTGPPGVNISDASIASSVPGTLATNPAVSAIQQGATASSSPQDDQPKKS
LWTEHKSPDGRTYFYNTETKQSSWEKPDELKSPAEQMLSKCPWKEFKSDTGKPYYYNSQT
KESRWTKPKELEDLEDMIKAEENGALDVSAASVPASVPVVTDITHASAAETEATVPVVGE
EQPVQTPVQAQEEPTEVTLNSVEEAPNQEVPVNFFASDPVKKEERPELVKKVYKWNTKEE
AKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEE
ARIKYKEAKETYQRYLESHEKMTSTTRYKKAEQMFGEMEVWTAVPERDRLEIYEDVLFYL
AKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKE
DALICFEEHIRALEKEEEEEKQKSLLRERRRHRKNRESFQKFLDELHDHGQLHSMSAWME
MYPTVSSNIRFANMLGQPSFGVYSVGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGF
TVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEETRKMKRKEA
AFKSMLKQAAPPLEHDSAWDSVRDRFLKESAFEDITLESERKRIFKDFVQVLEHECQHHH
SKNKKHSKKSKKHHRKRSRSRSGSDSEEDDYHSKKKKRTPSRSASERSSSAETEHSYKKS
KKHKKKGKKRRHKSASPESDADKDRKGRDRDRDREREKEKEKEREREREREREKEIEKSR
GKSRAESKQKSPKGGGGGGGLRKREKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaccacctgggatgccacctcattttcctccaatggggatgccacccatgggt
cagagacctccaaacatgaccccaatgcctcctggtatgatgccaccaatgatgcctcct
atgggaggaccattgggacagatgccaggcatgatgccaccaatgatgccaggaatgatg
atgccacctcatatgccagctgcttcaatgcaacctacaggaccgcctggtgtaaacatt
tcagatgcttccatagcttcatcagtgcctggaactttggccacaaatcctgcagtttct
gcaattcagcaaggtgccacggccagcagctctccacaagatgaccaaccaaagaaatct
ttgtggactgagcacaagtctcctgatggaaggacatacttctacaatacagaaactaaa
cagtcctcgtgggaaaagccagatgagcttaaatcacctgcggagcaaatgttgtcaaag
tgtccttggaaggagttcaagtcagacacgggaaagccttattattataactctcaaaca
aaggagtctcgctggacaaaacctaaagagctggaggatcttgaagatatgatcaaggct
gaagaaaatggggctctagatgtttcagcagcctccgtgcctgcttcagtacctgttgtt
acagacatcactcatgcatctgctgcagagactgaggccacagtccctgttgtcggtgaa
gaacaaccagtccaaactcctgtccaggcacaagaggaacccacagaagtcactctgaat
tcagtcgaggaggctcctaatcaagaggttccagtaaatttttttgctagtgatcctgtt
aaaaaggaagagaggccagaactagtcaagaaagtatacaagtggaacactaaagaagaa
gccaaacaagcattcaaagaactgttaaaagaaaagggcgtttcatccaatgcctcttgg
gaacaagctatgaaaatgattatcaatgaccctagatatagtgcattgcctaagctgagt
gagaaaaaacaagccttcaatgcttacaaggtacagactgaaaaagaagaaaaggaagaa
gctagaattaaatacaaggaggccaaagaaacctatcagagatatctggaaagtcatgag
aaaatgacatcaactacaagatataagaaagctgaacagatgtttggagagatggaggta
tggacagcagttcctgagcgtgatagattagaaatctatgaagatgtcttgttttacctt
gcaaaaaaagaaaaggaacaagccaaacagttgagaaaaagaaattgggaagccctgaag
aacattttggacaacatggctaatgtaacgtacaggacaacctggtcagaggcgcagcag
tatctactggacaaccctacatttgcagaggatgaagaattgcagaatatggataaggag
gatgcattaatctgctttgaagaacatataagagccttggagaaggaagaggaggaagaa
aaacaaaaatctttactaagggaaagaaggcggcatcgtaaaaacagggagtcgtttcaa
aaattcttggatgagctgcatgaccacggacaactgcattcaatgtctgcgtggatggaa
atgtatcctactgttagctccaacataagatttgccaacatgctggggcaaccttctttt
ggtgtgtattctgtaggttcaacacctctggatctttttaagttttacgttgaagatctg
aaggcccgatatcacgatgaaaaaagaatcatcaaagacatccttaaggacaaagggttt
acagttgaagtcaatactagctttgaagactttgggactgttatcagctctgataaaaga
gccacaactttggatgctggaaacatcaaacttgccttcaacagtttgttggagaaagca
gaagctcgagagcgggaaagagaaaaagaagaaacccgaaagatgaagaggaaggaagct
gcctttaaaagcatgctaaaacaggctgctcccccactcgaacatgattcagcatgggat
agtgttcgagatagattcctgaaagaatctgcctttgaagacattacattagaatctgaa
agaaaaaggatattcaaggacttcgtacaggttctagagcacgagtgtcaacatcatcat
tcaaagaacaagaagcactccaaaaagtcaaaaaagcaccacagaaagcgatcccgctct
cgttcgggctccgattcagaggaagacgactaccattccaagaaaaagaaacgcacgccg
tccagatctgcatctgagcgttcttctagtgcagaaacagagcacagttataagaaatcg
aaaaagcacaagaaaaagggcaaaaagaggagacacaagtctgcatccccagaatctgat
gctgacaaggacagaaaagggagggatcgtgacagagaccgtgagcgggagaaggagaag
gagaaggagagagagagggagagggagagggagagggagaaggagattgagaaatccaga
gggaaatcccgggctgaatctaagcaaaaatctccaaagggggggggggggggggggggg
ctaagaaaaagggagaaggaagaaggtggatgggacacatcaggcagtgagttgagtgaa
ggagaactagaaaaacgaaggagaactcttctggaacagctggatgcaccataa
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