Polyodon spathula (Mississippi paddlefish): 121322383
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Entry
121322383 CDS
T07273
Name
(RefSeq) integrin beta-5-like
KO
K06588
integrin beta 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04145
Phagosome
pspa04148
Efferocytosis
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04810
Regulation of actin cytoskeleton
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121322383
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121322383
04148 Efferocytosis
121322383
09144 Cellular community - eukaryotes
04510 Focal adhesion
121322383
09142 Cell motility
04820 Cytoskeleton in muscle cells
121322383
04810 Regulation of actin cytoskeleton
121322383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121322383
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121322383
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
121322383
Cell adhesion molecules [BR:
pspa04515
]
Integrins
Integrin beta subunits
121322383
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
PSI_integrin
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
vWA_SIBA-E
EGF_Teneurin
EGF_TEN
BT_3044-like_C
Motif
Other DBs
NCBI-GeneID:
121322383
NCBI-ProteinID:
XP_041118182
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Position
10:44119263..44160472
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AA seq
802 aa
AA seq
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MLERKCLSHAVLVTCLVLELFIQNGKGLSICMSGSATSCEECLLIHPVCAWCAQEEFGSS
RTITSRCDYRESLLKRGCEKHFIHSPGSSMAVLRNKPLSSKGSAPTQYDVIQIMPQKIAL
SLRPGDQTSFGVQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLAEEMKKLTSNFR
LGFGSFVDKNISPFSYTAAKYQNNPCNGYKLFPNCVPSFGFRHLLSLTDKVDRFNEEVQK
QLVSRNRDAPEGGFDAILQAAVCKDEIGWRKEAFHLLVFTTDDVPHLALDGRLGGVVQPH
DGQCHLNEKNEYSGSAKMDYPSLALLGEKLAENNIYLIFAVTKRLYVIYKNFTALIPGTT
VEILDQDSKNIIQLIINAYNSIRSKVELTVWDHPEDINLSFTAICQDGRPRPGLRKCGDL
KIGDTVSFNVTVDARGCPAEDTRHKFTIKPVGFKDTLEVTVNYKCTCGCTKETESNSTKC
SSIGTYQCGICSCDPGYLGARCECQEGEDSMYQTMCREAEGKQLCSGRGECSCNQCLCYE
SEFGKIYGTFCECDDFSCARHKGILCSGHGECHCGECKCHAGYIGDNCICSTETDTCLSI
DGQICSGRGNCVCGECQCSEPGAFGDTCEKCPTCPDACGTKRECIECRLFNSGRLADNQT
CDRLCTDEIITVDTLNTDDQNAVLCLYKTENDCVMTFTYSEHASGQSVLAALKEPECGTP
PDALTVLLAVVGSILLVGIVLLAIWKLVITVHDRREFARFQSARSRARYEMASNPLYKQP
ISSHAMETVFNMQNKTYNGTVH
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaaggaaatgtttatctcatgctgtcttagttacctgtttggttttggaatta
ttcattcagaatggtaaaggtcttagtatttgcatgagtggcagtgctacatcctgtgaa
gaatgtcttctcatccacccagtctgtgcctggtgtgcccaagaggaattcggcagtagc
aggacaatcacttcaagatgcgactacagggaaagcctgttgaagaggggctgtgagaag
cactttatccacagtcctggcagcagcatggcggtgctcaggaataagcctttaagttct
aagggctccgctcccacccagtacgatgttattcagataatgcctcagaagattgctctc
agcctgagacccggtgaccagacctcttttggggtgcaggtgcggcaggtggaggactat
cccgtggatctctactacctgatggacctttccctctccatgaaggacgacctggacact
atccgcaacttgggcaccaaactggcggaagaaatgaaaaaactcaccagcaatttccgt
ctgggctttggctcgttcgtggacaaaaatatatcaccgttctcctacacagcggcaaag
tatcagaacaacccctgcaacggatacaagctgttccccaactgcgtcccttcttttggg
ttccgccacctcctctccctgactgacaaagtggaccggttcaacgaggaagtgcagaag
cagctggtgtctcggaacagggatgcgccagagggggggttcgacgccatcctgcaggcc
gcagtgtgcaaggatgagattggctggaggaaggaggcgttccacttgctggtcttcacc
acggatgacgttccacacctcgcgctggacggcaggctgggcggagtggtccagccgcac
gacgggcagtgtcacctgaacgagaagaacgagtacagcggctccgcaaagatggattat
ccatcacttgcactcctgggggaaaaactggcagaaaacaacatctatctcatcttcgct
gtgacaaaaaggctctatgtgatttacaagaactttactgcactgataccagggacaact
gtggaaattcttgaccaggactccaagaacattatccagctgatcatcaatgcctataat
agtatccgttctaaagtggagttgacggtctgggatcacccggaagacattaacctgtcc
ttcacagccatctgtcaggatggccggccacgcccagggctcaggaagtgcggggacctc
aaaatcggggacactgtctctttcaatgtgactgtggatgcaaggggctgccctgctgag
gataccaggcacaagttcaccatcaaacctgtcggatttaaggatactttggaggtcact
gtcaactacaagtgtacgtgcggatgcaccaaggagacagagagcaacagcaccaagtgc
agcagcatcggcacctaccagtgtggcatctgcagctgtgatcctgggtacctgggagcc
cggtgcgagtgccaggagggggaggacagcatgtaccagaccatgtgccgggaggccgag
gggaagcagctctgcagtggcaggggggagtgcagctgcaatcagtgcctctgctatgag
agcgagtttgggaagatatacgggacgttctgtgagtgcgacgacttctcctgtgcccgg
cacaaaggcattctctgctcaggtcatggggaatgccactgtggagaatgcaagtgtcac
gccggctatatcggagacaactgtatctgctcgacagaaacagatacatgtctctccatt
gacggtcagatctgcagcggccgggggaactgtgtctgcggggaatgccagtgcagcgag
ccgggagctttcggggacacctgcgaaaaatgccctacctgccctgacgcctgtggcaca
aagagggagtgcattgagtgcaggctgtttaactcaggaaggcttgccgacaaccagacc
tgtgacagactctgcacggatgagatcatcacagttgacacgctcaatacagatgaccag
aatgcagttctgtgcctgtataaaactgagaacgattgtgtgatgacgtttacgtactcg
gaacacgccagtggccagtcagtcctcgctgcactcaaggagcctgagtgcggcactcct
ccggacgcgctcacggtgctcctggccgtcgtcggcagcatcctgctggtcggcatcgtg
ctgctggcgatttggaagctcgtcatcactgtccacgacagacgggaatttgccaggttc
cagagcgcccgttccagagccagatacgagatggcatccaatcccctgtacaagcagcct
atctctagccatgcaatggagactgtgtttaacatgcagaacaagacatacaatggcacg
gtccactga
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