Polyodon spathula (Mississippi paddlefish): 121322393
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Entry
121322393 CDS
T07273
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
pspa04148
Efferocytosis
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121322393
04148 Efferocytosis
121322393
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121322393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121322393
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121322393
Hops complex
121322393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
Spectrin_4
Motif
Other DBs
NCBI-GeneID:
121322393
NCBI-ProteinID:
XP_041118224
LinkDB
All DBs
Position
10:44378577..44396524
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AA seq
837 aa
AA seq
DB search
MAFVTANWNPLGEAFYRKIELYEMVWNLREGLKDCLIAAAPYGGPIALLKESQRRERSAS
ARPLLEIYSAAGVAMASFPWKSGVVVHIGWTVSDDLLCIQEDGTVLIYDMFGNFRRHFSM
GNEVLQNQVIEAKVFHSAYGTGVAIVTGAFRFTLAANIDDLKLRRLPEVPGLQVAPSCWA
VLMQDRQTKVVLASGKDLYMLDNTACTLVTPPGIDPQVSSYFQMAASFSYKYLALFTDTG
HVWMGTSNLKEKLSEFDTKVRSPPKQMVWCRRPKSQQPSVVLMWDRLLLVAGKCRESIKY
HLDEESFLVPELDGVRIVSRSFHEFLHEVPGACEEIFKIASMAPGALLLEAHKEYEKESQ
KADEYLREIKEQNLLPEAVRQCVEAAGFEHEPETQKILLRASSFGKCFLSNFPPELFVGM
CLDLRVLNAVRDYSVGIPLTYSQYKQMTVQVLIDRLVFRRLYPLAIEICRYLKIPEFQGV
SRVLKHWACFKVQQKEDPDDVIACAINQKLGDTAGISYSEIAARAYECGRTELAIKLLEF
EPRSGEQVPLLLKMKRSQLALSKAIESGDTDLVYMVVTYLKSEMNRGDFFMTLRNQPVAL
SLYRQFCKHQEQNTLKDLFNQDDDHQELGNFYVRASYGEGSVKARMAALQNAVDEFNKAK
NEFSAKATEEQMKLLRWQCRFQEEFDKPYLDCSLHETVRSLLEDGKHKQAEQLYKDFHIP
DKRFWWLKISALAEKEDWEELEKFSKSKKSPIGYLPFVEICVKHHNKYEAKKYVSKVTLE
QKVKAHLALGDLEQAVEAAIERRSESDLNLVLSRCIPTTDRALLDKINHARAGVLKK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgtgacagcaaactggaacccgctgggggaagcgttttacaggaagatcgag
ctgtatgaaatggtttggaacctccgagaagggctgaaggactgcctcattgcagccgcc
ccgtacgggggccctatagccctgctgaaggagagtcagagacgggagcgctctgccagt
gccaggcccctgcttgagatctactcagctgccggagtggccatggccagcttcccgtgg
aagagtggtgtggtggtgcacattggctggactgtcagtgatgacctgctgtgcatccag
gaggacggcaccgtgctgatctacgacatgttcggcaacttccgccggcacttcagcatg
ggcaatgaagtgctgcaaaatcaagtgatcgaagccaaggtgttccactctgcctatgga
acaggggttgccatagtgaccggagcgttccggttcaccctggctgccaacattgatgac
ctaaaactgcgccgcctgccagaagtcccaggcctgcaggtggcaccctcgtgctgggcc
gtgctgatgcaggacagacaaaccaaggtggtgctggccagcgggaaagacctgtacatg
ctggacaacacagcctgcactctagtgacccccccagggatagacccccaggttagcagc
tacttccagatggcagcgtccttcagctacaagtacctggcactgttcacagacaccggg
cacgtgtggatgggcacctccaacctcaaggagaagctcagtgagtttgacaccaaagtc
cgcagcccaccgaagcagatggtgtggtgccgcagacccaagagccagcagccctccgtg
gttctgatgtgggacagactgctcctggtggctgggaagtgcagagagagcatcaagtac
cacctggatgaggaatcgttcctggtcccagagctggacggggttcgaatcgtgagtcgc
agcttccacgagttcctgcacgaggtgccaggtgcctgtgaggagatcttcaagatcgcc
tcgatggctccgggggctctgctgctggaggcacacaaagagtacgagaaggagagtcag
aaggcagacgagtacctccgggaaatcaaagagcagaacctccttcctgaggcagtgagg
cagtgtgtggaggcagccggctttgagcacgagccagagacacagaaaatcctgctcagg
gcctcctcctttgggaagtgctttctcagtaacttcccccccgagttgtttgtggggatg
tgtctggacctgcgagtcctcaatgcggtgcgagactacagcgtgggaatcccgctcact
tactcacaatacaaacagatgactgtgcaggtgctgattgacaggctggtgttccgccgg
ctctacccgcttgccatcgagatctgccgctacctgaagatccctgagttccagggggtg
agcagggtgctgaaacactgggcctgcttcaaggtacagcagaaggaggaccctgatgat
gtcatagcttgcgccatcaaccagaagctgggtgacacggcgggcatctcgtactccgag
atcgcagcgagggcatacgagtgtggcaggactgagctggccatcaagctcctggagttt
gaaccccggtcaggagagcaggtgcctctattgctgaagatgaagagaagccagctggcc
cttagcaaagccattgagagcggggacactgacctggtgtacatggtggtgacctacctg
aagagtgagatgaaccgtggggatttcttcatgactctgcggaaccagccagtcgcactc
agcctctacagacagttctgtaagcaccaggagcagaacacgctgaaggacctcttcaac
caggacgatgatcaccaggaactgggcaatttctacgtgcgagccagctacggggagggg
agcgtcaaggctcggatggcagcgctgcaaaatgccgtggacgagtttaacaaagccaag
aacgagttctctgccaaggctacggaggagcagatgaaactactgcggtggcagtgtcgc
ttccaggaggagtttgacaagccctacctggactgctccctccatgagactgtgcgctcg
ctgctggaggacggcaagcacaagcaagcagagcagctgtacaaggacttccacatcccg
gacaagaggttctggtggttgaagatctctgctctggccgagaaggaggactgggaggag
ctggagaagttctccaagagtaagaagtctccgatagggtacctgccttttgtagagatc
tgtgtaaagcaccacaacaagtacgaagcgaagaagtacgtgtcaaaagtgaccctggag
cagaaagtgaaggctcatctagcgctgggggatctggagcaggcagttgaggctgcgatt
gagaggaggagtgagagcgacttgaacctggtcctgtcacgctgcatccccaccaccgac
cgggccctgctggacaaaatcaaccacgcacgggccggagtgctcaagaaataa
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