KEGG   Polyodon spathula (Mississippi paddlefish): 121322394
Entry
121322394         CDS       T07273                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121322394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pspa03041]
    121322394
   03036 Chromosome and associated proteins [BR:pspa03036]
    121322394
Spliceosome [BR:pspa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    121322394
 Complex B
    121322394
 Complex C
   U2 SnRNP specific factors
    121322394
Chromosome and associated proteins [BR:pspa03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    121322394
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 T4_baseplate
Other DBs
NCBI-GeneID: 121322394
NCBI-ProteinID: XP_041118225
LinkDB
Position
10:complement(44433844..44453435)
AA seq 1325 aa
MAKIAKTHEDIEAQILEIQEKKAALLEGSEEGDGGVGLDSTGYYDQEIYGGSDSRFAGYV
TSIAANEQEDDDEEDSSTSLLGQKKPGYHAPVALLNDIPQSAEQYDPFAEHRPQKIAERE
DEYKGRRRQMIISPERLDPFADGGKTPDPKLHARTYMDVMREQHLTKEEKEIRQQMAEKA
KAGELKVVNGSAASQAAAAAAAKRKRRWDQTAEQTPNSASTTPKKVSSWDQADVTSEQTP
GHTPGHTPSESRWDETPGRAKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGHVTP
GHGGATSSVRKNRWDETPKTERETPGHGSGWAETPRTDRGGDSVEETPTPGASKRKSRWD
ETPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPL
TDDELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPMGGMTGFHMQTEDRTMKTINDQ
PSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQI
TDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIE
PLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASAL
GIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQ
KVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDA
EYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPAFFKHFW
QHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNL
GAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWR
LNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKA
IVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRIC
FELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIV
AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD
RDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRV
AIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRVYNDEKNPFVRYE
LEYSL
NT seq 3978 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaagacacacgaagacattgaggctcagatcctcgagatacaggag
aagaaggcggctcttctggagggctctgaggaaggagatggaggagtgggactcgactcc
actggctactacgaccaggagatctacgggggcagcgacagccgcttcgccggctatgtc
acctccatcgccgccaatgaacaggaagatgatgacgaggaagactcctccaccagcttg
ctggggcagaagaagcctgggtaccacgctcctgtggcactgctcaatgatatcccacag
tcagcagagcagtatgatccgtttgcggagcaccgtccccagaagatcgcggagcgggag
gacgagtacaaaggtcgccggcggcaaatgatcatctctcctgagcgcctcgaccccttt
gcagacggagggaaaaccccagatcccaaactccatgccagaacgtacatggacgtcatg
cgtgagcagcacctcacaaaggaagagaaagagatccgtcagcagatggcggagaaggcg
aaggcaggggagctgaaggtggtgaatggctctgctgcgtcccaggcagctgcagccgca
gccgcaaaacgcaagcgccggtgggaccagactgcggagcagacccccaacagtgccagc
accacacccaagaaggtgtccagctgggaccaggcagacgtcacctcagagcaaactccg
ggacacacaccgggacacaccccctctgagagtcgctgggatgagacccccggccgggca
aagggcagtgagacccctggagccacccctagctcccgcatgtgggaccccacccccagt
cacacccccgcaggagcggccacgcccggcagaggagacacacctggccacgtcacgcca
ggccatgggggagccacctctagcgtacgcaaaaaccgctgggatgagacgcccaagaca
gagagagagacccctggccacggcagcggctgggctgagaccccccgtacggaccgtggt
ggtgactctgtggaagagactcccaccccaggggccagcaagaggaagtcgcgctgggac
gagacccctgccagccagatgggctcctccacccccctgctcaccccgggaaagaccccc
ataggaacccctgccatgaatatggccactcccacgccaggtcacctgatgagcatgacc
cccgagcagctgcaggcctggcgctgggagcgtgagatagacgagaggaaccggccactc
actgacgatgagctcgatgccatgttccctgagggatacaaggtgctgccccctccagcg
ggctacgttccaatccgcaccccggcccgcaagctcacggctacccccacccccatggga
ggaatgaccggattccacatgcagacagaggaccgcacaatgaagaccatcaacgaccag
ccctccggcaacctgcccttcctaaagccagacgacatccagtacttcgacaaactgctg
gtggaggtggatgagtcgactctcagtccagaggagcagaaagaacggaagatcatgaaa
ctgctgctgaaaatcaagaacggcactccgccaatgagaaaggccgcgctccgtcagatc
acagataaagcccgtgagtttggggctggcccgctcttcaatcagattctgcccctgctg
atgtcccccacgctggaggatcaggagcgccatcttctggtgaaggtcattgacaggatc
ctatacaagctggacgacctggtccggccctatgtacacaagattctcgtggttattgaa
cccttgttgattgatgaagattactatgccagagtggagggcagagaaataatctccaat
ttggccaaggctgctggtctggccaccatgatctccaccatgcgccctgacattgacaac
atggatgagtatgtgaggaacacgacggcccgcgccttcgcagtggtggcctcggcgctg
gggatcccctcgctgctccccttcctcaaggccgtgtgcaagagcaagaagtcctggcag
gccaggcacactggcatcaagatcgtgcagcagatcgccatcctcatgggttgtgccatc
ctgccccatctcaggagcctggtggagatcattgagcacggtctggtggatgagcagcag
aaggtgcgcactatcagtgctctggctatcgctgccctggctgaggcagccaccccctac
ggtatcgagtccttcgactctgtgctcaagcccctgtggaaaggtattcggcagcacaga
ggcaagggtctggctgctttcctgaaggctatcggctacctgatccccctgatggacgca
gagtatgccaattactacaccagggaagtgatgctgatcctcatcagagagttccagtct
cccgacgaggaaatgaagaagattgtgctcaaggtggtgaagcagtgctgtggcacagac
ggcgtggaagcaaattacatcaagacagagatcctgccggccttcttcaaacacttttgg
cagcacaggatggcgctggacaggaggaactacagacagctggtggacaccacggtggag
ctggctaacaaggtgggcgctgcagagatcatttctcgcatcgtggacgacctgaaggac
gaggcggagcagtaccgcaagatggtgatggagaccatagagaagatcatgggcaacctt
ggggctgctgacattgaccacaaactggaggagcagcttatcgacggcatcctgtacgcc
ttccaggagcagactactgaggactccgtgatgctcaatggctttggcacggtggtgaat
gcgcttgggaaacgtgtgaagccctacctgccccagatttgcggtaccgtcctgtggcgt
ctcaacaataagtccgccaaagtgcgccagcaagccgcggacctcatttccagaaccgcc
gtcgtcatgaagacctgccaggaggaaaagctgatgggtcacttgggggtggtgctgtac
gagtacctgggagaggagtaccccgaagtgctggggagcattcttggggcgctcaaggcc
attgttaatgttatcggtatgcacaagatgactcccccgatcaaggacctgctgcctaga
ctgacgcccatcctgaagaacaggcacgagaaggtccaggagaactgcatcgacttggtc
ggacgaattgctgaccggggagctgagtacgtctcagccagggaatggatgaggatctgc
tttgagctgctggaactcttgaaggctcacaagaaagccattaggagagccactgtcaac
acctttggctacatcgccaaggccatcggccctcatgatgtgctggccactctgctcaat
aacttgaaggtccaggagcgacagaaccgcgtgtgcaccaccgtggccatcgctatcgtg
gcggagacatgctcgcccttcaccgtgctgccagcgctcatgaacgagtaccgtgtgcct
gagctcaacgtgcagaacggcgtgctcaagtccctctccttcctctttgagtacatcggg
gagatgggcaaggactacatctacgcagtcacgccactgctggaggacgctctcatggac
agagacctggtgcacaggcagacagccagtgcggtggtgcagcacatgtctctaggtgtg
tacgggtttggctgtgaggactccctcaatcacctgctgaactacgtctggcccaacgtg
ttcgagacctcgccccatgtcatccaggcggtcatgggggcactggaggggctgcgcgtt
gccatcgggccctgccgcatgctgcagtactgcctacagggcttgttccacccagcaagg
aaggtgagggacgtttactggaagatctacaactccatttacatcggctcccaggatgct
ctgattgcacactacccccgcgtgtataacgacgaaaagaaccccttcgtccgctacgag
cttgagtactccttgtaa

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