Polyodon spathula (Mississippi paddlefish): 121322395
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Entry
121322395 CDS
T07273
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121322395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121322395
03110 Chaperones and folding catalysts [BR:
pspa03110
]
121322395
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121322395
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121322395
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
121322395
Messenger RNA biogenesis [BR:
pspa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
121322395
Chaperones and folding catalysts [BR:
pspa03110
]
Heat shock proteins
HSP60 / Chaperonin
121322395
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
121322395
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121322395
Exosomal proteins of other body fluids (saliva and urine)
121322395
Exosomal proteins of breast cancer cells
121322395
Exosomal proteins of colorectal cancer cells
121322395
Exosomal proteins of bladder cancer cells
121322395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
121322395
NCBI-ProteinID:
XP_041118228
LinkDB
All DBs
Position
10:complement(44463312..44470927)
Genome browser
AA seq
576 aa
AA seq
DB search
MLRLPSVLRHVRPVSRALAPHLTRGYAKDVKFGSEARALMLQGVDLLADAVAVTMGPKGR
TVIIEQSWGSPKVTKDGVTVAKAIDLKDKYQNIGAKLVQDVANNTNEEAGDGTTTATVLA
RAIAKEGFEKISKGANPVEIRKGVMLAVEVVINELKRLSKPVTTPEEISQVATISANGDQ
EIGNLISDAMKRVGRKGVITVKDGKTLHDELEVIEGMKFDRGYISPYFINTTKGQKCEFQ
DAYLLLSEKKISSVQSIVPALEIANQNRKPLVIVAEDVDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLRDMAVATGGAVFGDEVTGLTLEDIQPHDFGKVGEVIITKDDTMLLKG
KGDKEAVEKRIQQIVEELEVTNSDYEKEKLNERLAKLSDGVAVLKIGGTSDVEVNEKKDR
VTDALNATRAAVEEGIVQGGGCALLRCIPVLDTIKPANEDQKVGIEIIRSALRIPAMTIA
KNAGVEGSLVVEKILQSSDEIGYDAMLCTYVNMVEKGIIDPTKVVRTALMDAAGVASLLS
TAEAVVTELPKEEKEAPMGGGMGGMGGMGGMGGGMF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgctccgcttgcccagtgtattgagacacgtgcggccggtctcccgcgccctcgccccc
cacctcacccggggctacgccaaggacgtgaagttcggcagtgaagccagggcgttgatg
ctgcagggtgtggacctgctggctgacgccgtggctgttaccatgggacccaagggccgc
acggtgatcattgagcagagctggggcagccccaaggtgactaaggatggtgtgacagtg
gccaaggccatcgacctgaaggacaagtaccagaacatcggcgccaagctggtccaggac
gtggcgaacaacacgaacgaggaggcgggcgacggcaccaccaccgccaccgtgctggcc
agagcgatcgccaaggagggcttcgagaagatcagcaagggggccaaccctgtggagatc
cgcaagggggtcatgctggctgtggaggtcgtcatcaacgagctgaagaggctgtccaag
cccgtcaccacccccgaggagatctcgcaggtggccacaatctctgccaatggtgatcaa
gagattggcaacctcatctcggacgccatgaagagagtggggcgcaaaggtgtcatcaca
gtcaaggatggtaaaactctgcatgatgagctggaggtcatcgaaggcatgaagttcgac
cggggttacatctctccctacttcatcaacaccactaaaggtcagaagtgtgagttccag
gacgcctatctgctcctgagtgagaagaagatctccagtgtccagtccattgttcctgct
ctggaaatcgcaaaccagaaccgcaagcccctggtcatcgtggcggaggatgtggacggg
gaggcactcagcacactcgtgctcaacaggttgaaggtggggcttcaggtcgtggcagtc
aaggctccaggctttggagacaacaggaagaaccagctgcgagacatggccgttgccacc
gggggtgctgtgtttggggacgaggtgaccggcctcactctggaggatattcagcctcat
gacttcgggaaggtgggggaggtgatcatcaccaaggatgataccatgctgctcaaaggc
aagggggacaaggaggccgtggagaagcgcattcagcagatcgtggaggagctggaagtc
accaacagcgactacgagaaggagaagctcaacgagaggctggccaagctgtctgatgga
gtcgctgtgctcaagatcggtgggacgagtgatgtggaggtgaacgagaagaaggaccgt
gtgacggatgctctgaacgccacgcgtgccgcggtggaggagggcattgtacaaggagga
ggctgcgctctgctgaggtgcatccctgtgctggacacaatcaaacctgccaacgaagac
cagaaagtgggtattgagattatccgtagtgccctgcgtattcccgccatgacgatagca
aagaacgcgggagtggagggctctctggtggtggagaagatcctgcagagctcagatgag
atcggctacgacgcaatgctttgcacctacgtcaacatggtggagaagggcatcatcgac
cccaccaaggttgtccggactgctctgatggatgcggcaggcgtggcgtcactgctctcc
acagctgaggccgtggtgacagagctgcccaaggaggagaaggaggctcccatgggggga
ggcatgggcgggatgggcgggatgggtgggatgggcggaggcatgttctag
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