Polyodon spathula (Mississippi paddlefish): 121322773
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Entry
121322773 CDS
T07273
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121322773 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121322773 (dhx36)
03012 Translation factors [BR:
pspa03012
]
121322773 (dhx36)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121322773 (dhx36)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121322773 (dhx36)
Translation factors [BR:
pspa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121322773 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
PhoH
NB-ARC
AAA_14
TsaE
DUF7428
AAA_16
NPHP3_N
NACHT
Motif
Other DBs
NCBI-GeneID:
121322773
NCBI-ProteinID:
XP_041118998
LinkDB
All DBs
Position
11:33369261..33399249
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AA seq
908 aa
AA seq
DB search
MRAVVQMDESREEHIVKLLNSVQSKKTERELYPLTSQTSRCKESQSRTFRTDSFSLKDTK
PVSDEDLDFLLQDSVRNSSLDQQLKSDLQKKKSDPKYLEMRRFREKLPSYNMKKELVDLI
KSNQVVVVSGETGCGKTTQVTQFILDDYIEKQMGSLCRIVCTQPRRISAISVAERVASER
AEACGDGNSCGYQIRLQCRLPRKQGSILYCTTGIILQWLRSDPHLSTISHIVLDEIHERN
LQSDVLITIMKDLMKFRDDLKIILMSATLNAEKFSKYFHNCPMIHIPGFTYPVKEYLMED
VIEMLRYCPQNQDRRPKWKKRFMQGQMARPEKELKEEEYRESWPSYARSLRDRYSESTID
ALEIMDNDDKLDLSLIVALIRHIVLKEEDGAILVFLPGWDDISGLNDLLMAQQMFKSDNF
VIIPLHSLMPTVNQTQVFKKPPPGVRKIVIATNIAETSITIDDVVHVIDGGKIKETHFDT
QNNISTMTAEWVSLANAKQRKGRAGRVQPGQCYHLYNGLRASLLDNYQLPEMMRTPLEEL
CLQIKILKLGRIASFLRDALDPPSDETVNLAVTHLMDLNALDKNEDLTPLGFHLARLPVE
PHIGKMILFGALLSCLDPVLIIAASLSFRDPFVIPLGKEKLADTKRKELSKNSKSDHLTV
VNAFWGWEEAKRHGYKAERDYCWEHFLSSNTLQMLHNMKAQFAEHLLAAGFIGSKNPKDP
NSNINSDNEKLIKAVICAGLYPKVAKIRPSFSKKRKMVKVYTKPDGKVSIHPKSVNAEEA
EFHYSWLIYHLKMKTSSIFLYDCTEVTPYSLLFFGGDISIQKDQDQDTIAVDEWIVFQSP
ARIAHLVKDLKRELDALLQEKIKNPQPVDWNDTKSKDCAVISAIIDLITTQESGAVKNFA
PRFSGGYY
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgagagctgtggttcagatggatgaatctagagaagaacacattgtcaagcttctgaac
tccgtccagtctaagaagactgaaagagaattatacccattaacatcccagacttctcga
tgcaaggagagccaaagcaggaccttccgtactgacagttttagtctgaaggacactaag
ccagtcagcgacgaagacctagacttcttgttacaagacagtgttcggaattcaagtcta
gatcaacaactcaaaagtgaccttcagaaaaaaaaatctgatccgaagtacttggaaatg
aggaggttcagggagaaacttccatcatacaacatgaaaaaggagctggttgatttgata
aaaagtaaccaggtggtggtagttagcggagaaacaggttgtgggaagacaacgcaagtt
acccagttcattctggatgactatatcgaaaagcagatgggctctctctgcagaatagtg
tgcacacagccgcgaaggattagtgccatttctgtagcagaaagagtggcttcagaaagg
gctgaggcttgtggagatggaaactcctgtggataccaaattagactacaatgccggtta
ccaaggaaacaaggttctatcttgtattgtaccacaggcatcatcctgcagtggctacgg
tcagatccgcacctttctaccatcagccacattgttttggacgaaattcacgagaggaac
cttcagtctgatgttctgataacaataatgaaagatcttatgaagttccgagatgacctg
aaaatcatcctcatgagtgctacattaaatgctgagaagttttcaaaatatttccataac
tgtccaatgatacacatccctggtttcacctatcctgtgaaagagtacctcatggaagat
gtgatcgagatgttacgatactgtccccaaaatcaagatcgcagacccaagtggaagaag
cgcttcatgcaaggtcaaatggctcgaccagagaaggagctgaaagaggaagagtaccga
gaaagctggcccagttatgcaagaagcctgcgtgacaggtattcggagagtactattgat
gcattagagatcatggataatgatgataaactagacctgtcactgattgtagcattgatc
aggcacattgtcctgaaagaagaggatggagctatactggttttcctgccaggctgggac
gatatcagtggtttgaatgatctcttgatggctcaacagatgtttaagtcagacaacttt
gtcatcataccgctacactctctgatgcctactgtcaaccagactcaggtttttaagaaa
ccacctccaggtgttcgtaaaattgtgattgctaccaatattgctgagacaagcatcacc
atagatgatgttgttcatgtaatagatggaggaaagatcaaggagactcactttgacaca
caaaacaatatcagcaccatgaccgctgagtgggtcagcctggccaatgccaaacagagg
aaaggccgtgctggaagggtgcagcctggtcagtgttaccatctgtataatggattgaga
gccagcctcctggataattatcagttgccggaaatgatgaggactccattggaggaactc
tgcttacaaataaagatattaaagcttggcagaattgcctcatttctcagggatgcattg
gatcccccatcagatgagactgtcaacttggctgtaacacatttaatggacctgaatgct
ttggataagaatgaggacctgactcctcttggcttccacttggctcgattgccagtagag
cctcacattgggaagatgatcctgttcggagctttgctgagctgcttggatcccgtcctt
attatagcagcaagcctcagctttagggaccccttcgtcatcccactgggtaaagaaaag
cttgcagatacaaagaggaaagagttgtcaaagaactctaaaagtgaccatctgactgtg
gtgaatgcattttggggctgggaggaagcaaaacgacatggttacaaagctgagcgtgac
tactgctgggagcactttttgtcttcaaacacactccagatgctgcacaacatgaaagca
caatttgcagaacacctgctggctgccggattcatcggcagcaaaaaccccaaagatccc
aattccaatatcaactcagacaatgagaagttaataaaagctgtcatctgtgctggcttg
tacccaaaagttgccaagatccgaccaagtttcagcaagaagagaaaaatggtgaaggtt
tacacaaaaccagatggcaaagttagcatccaccccaagtcagtaaatgcagaagaagca
gaattccactacagctggcttatctatcacctgaagatgaaaacaagcagtatattcctg
tatgactgcaccgaagtgactccctattcgctgctgttctttggaggtgatatctcaata
cagaaagaccaggaccaggacaccattgctgtagatgaatggattgtctttcaatctcca
gccaggatagcacatttagtaaaggatttaaagagggaacttgatgctcttcttcaagag
aagattaaaaaccctcaacctgtggactggaacgatacaaaatcaaaggactgtgctgtc
atatcggcgattattgatctaataactacacaggagagtggagctgttaaaaactttgct
ccccgtttttctgggggatactattaa
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