Polyodon spathula (Mississippi paddlefish): 121322860
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Entry
121322860 CDS
T07273
Symbol
rapgef2b
Name
(RefSeq) rap guanine nucleotide exchange factor 2 isoform X1
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121322860 (rapgef2b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121322860 (rapgef2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
PDZ
RA
cNMP_binding
PDZ_6
RA_2
PDZ_2
ABhydrolase-like_N
PDZ_4
Motif
Other DBs
NCBI-GeneID:
121322860
NCBI-ProteinID:
XP_041119232
LinkDB
All DBs
Position
1:complement(79486927..79636473)
Genome browser
AA seq
1639 aa
AA seq
DB search
MRMASYVDNSFRQAVMKNPAERTQQDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERH
EANEVLYYPDDIGTCWYILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMI
VVDYMDENEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPVGKPPLPRGYHTECT
KPQLPADFTKLHLTDSLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATESEAGEMDLSG
LPETAVDSEEDDDEEDIERASDPLMSRDIVRDCLEKDPMDRTDDDIEQLLEFMHQLPAFA
NMTMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYHDGRTEILCMGN
SFGVSPTMEKEYMKGVMRTKVDDCQFVCIAQQEYCCILNQVEKNMQKVEEEGEIVMVKEH
RELDRTGTRKGHIVIKGTTERLTMHLVEEHSVVDPTFIEDFLLTYRTFLSSPMIVGKKLL
EWFNDPCLRDKVTRVVLLWVNNHFNDFEGDPAMTHFLEEFENNLEREKMCGHLRLLNIAC
AAKAKRRLVTLTKPSREALLPFTLLGGSEKGFGIFIDSVETESKAAEAGLKRGDQILEVN
GQNFENVQISKATEILKNNTHLSITVKTNLFVFKELLARPAEEKKNGAPHLPKIGDIKKA
SRYSIPDLAVDVEQVIGFDKANKKAKANTVGGRNKLKKILDKTRISILPQKPYSDIGLGH
SQDDSIVGLRQSKHIPPALPVSGTLSSSNPDLLQSHQRILDFSNPPDLPDQVLRVFKADQ
QSRYIMISKDTTAKEVVVQAIREFALTAASEAYSLCEVSVTPEGVIKQRRLPDQLSKLAD
RIQLSGRYYLKNNMETETLCSDEDAQDLLRESHISVLQLSTVEVATQLSMRNFELFRNIE
PTEYIDDLFKLKSKTGSANLKNFEEVINQETFWVATEIVREQNQLKRMKIIKHFIKIALH
CRECKNFNSMFAIISGLNLAPVSRLRGTWEKLPSKYEKLFQDLQDLFDPSRNMAKYRNVL
NSQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAKEIRHVGRMASVNMDP
ALMFRTRKKKWRSLGSLSQGTTNSAVLDVVQTGGHKKRVRRSSFLNAKKLYEDAQMARKV
KQYLSNLTLDTNEENLQTISLQCEPSTNTLPKSGDKKGGKPDTSPVVPRAASQQKQQQQQ
KGNQALQVPAVSLYPSRKKVPVKDLPPFGTSSPQALKKILALSEEAGDRHKKQPEDTISN
AASHLPSPPTSPQSSPRKGYTLAPSGTVDNFSDSGHSEISSRSSIVSNSSFDLMPGLMHD
DKRQRHSVSVVDSSLGVGRMERRATIDPDQYSLGSYALMREGRNLYPGATVLSSPSSEEL
TQDQGDRASLDAADSGRGSWTSCSSGSHDNIQTIQHQRSWETLTFAHPHFDNSAEGAGLW
ASGCQIDQMMYSDSSSKLSRNSQDHGQGRGSWASSTGYWGEDSEGDTGTIKRRGGKDVNA
DAETSSIMSNTSEDTKQHSRPSHITAPSGTAKSLIARKEGRYREPPPTPPGYTALTVSDF
PEGQAHPGRKPPDYNVALQRSRMVTRSCDPQQTHSHPGTRPVSRPQWHKPNEVDPRLSRF
QSQGFSAEEEDEDEQVSAV
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgagaatggcttcttacgtggacaacagtttccgacaggcggtgatgaaaaacccggcc
gaaaggacgcaacaggatttggaaatagtgtattcgtacctacatggaatggaagccttg
tctaaccttcgagaacatcagctaaggttaatgtgtgaaaccgtaagatatgaaagacat
gaagcaaatgaagtgctatactaccctgatgacattggtacctgttggtatatcctgctg
tctggttcagtattcatcaaagaatccatgtttttgccaagaagcagttttggcaagcgc
tctgcaggaagccttagacgtggctgtgaatgcattgtgttggagccttctgaaatgatt
gtggtggactatatggatgaaaatgaggagtattttcagcggcaagcatctcacaggcaa
tctcgaaggagatttcggaaaattaaccagaaaggagagagacaaacaattattgacaca
gtggatccgtaccctgttgggaagcctccattacctagaggataccacacggaatgcact
aaacctcagcttcctgccgatttcaccaagctccacctcactgacagcctccatccgcag
gtgacccacgtgtcctccagtcattcaggatgtagcattacaagtgactctgggagtagc
agtctgtcagatatttaccaggccacagagagtgaggccggggagatggatctgagtggg
ctgcctgagacagcagtggactcggaggaggatgacgatgaggaggatattgaacgtgct
tcagaccctctgatgagtcgggatattgtccgtgactgccttgagaaggaccccatggat
aggacagacgatgacattgaacaattactagaattcatgcatcagctgcctgcatttgcc
aatatgacaatgtccgtgcggagagagctgtgtgcggtgatggtgtttgcggtggtagag
cgagccggaacaatagtgctcaatgacggggaagagctggactcctggtcagtgattttg
aacgggtctgtggaagtgacgtaccacgatgggcgtactgaaatcctgtgtatggggaac
agctttggggtttcccctacaatggagaaagagtacatgaagggagtaatgagaaccaaa
gtggatgattgccagtttgtttgcatagcccagcaggaatactgctgcatcctcaatcag
gtagagaagaacatgcagaaggtagaagaggagggagagattgtgatggtgaaggagcac
agggagcttgatcgcactgggaccaggaaaggacacattgtcatcaaggggacaacagaa
aggctgacgatgcatctggttgaggagcactctgtggtagatcccacgttcatcgaagac
tttctcctgacatacaggaccttcctttccagcccaatgatagtaggcaagaaactgctg
gagtggtttaatgacccatgcctcagggacaaggttacacgggtagtgttgctgtgggta
aacaatcacttcaatgactttgaaggagatccagccatgactcactttcttgaagaattt
gaaaacaatttagaaagagagaaaatgtgtgggcatctaagactgttaaatattgcctgt
gctgctaaagccaaacgaagactagtaacactaacaaaaccttccagggaggcccttttg
cccttcacccttttgggagggtcagagaaagggtttggaatcttcatagatagtgtagaa
actgagagcaaagctgctgaagctggactaaaacgtggtgaccagatattggaggttaat
ggacaaaactttgagaatgttcagatttccaaagccactgaaattttgaagaacaacact
cacctgtctatcacagtgaaaacaaacttatttgtatttaaagaacttttagcaaggcca
gctgaggaaaagaagaatggtgctccccatctacccaagatcggtgatattaagaaagca
agtcgctactcaatcccagacctggctgtggacgttgagcaggtgatcggctttgacaaa
gccaataagaaggctaaggccaacactgtaggaggaaggaacaagctaaagaaaatactt
gacaagactcgcatcagcattctaccccagaaaccatacagtgacattggccttggccac
tctcaggatgacagcatcgtggggctgaggcagtcaaagcatatcccccctgcattgcct
gtgagcgggaccttatcttctagcaaccctgatctgttacagtctcaccagcgcattctg
gatttcagcaatcctccagatttaccagaccaggtcttgcgggttttcaaggcagaccag
cagagccgctatatcatgatcagcaaagacacaactgccaaggaagtcgtggtccaggct
atccgggagtttgcattgaccgcagcctctgaggcctactctctgtgtgaagtctcggtc
accccagaaggtgtcatcaagcaaaggcggcttcccgatcagctctctaaactggcagac
agaatacagctcagtggaaggtattacctgaagaacaacatggaaacagagacgctgtgc
tcagacgaggatgcccaggacctgctgcgggagagccacatttcggtgctgcagctaagc
acagtggaagtggccacacagctctccatgaggaactttgagctgttccgcaacattgag
cccaccgagtacattgatgacctcttcaagctcaagtccaagacaggctctgccaacctg
aagaacttcgaggaggtcatcaaccaggaaacgttctgggtggccacagagatcgtgaga
gagcaaaaccaactgaagaggatgaagatcattaaacacttcatcaagatcgccctgcat
tgcagagagtgcaagaacttcaactccatgtttgcaatcatcagtggattaaacttggcc
ccagtatcaaggttgcgtggtacctgggaaaagcttcctagcaaatatgagaagctgttt
caagacctgcaggatctctttgacccctccagaaacatggcaaaatatcgcaatgtcctc
aacagccagaatctgcagcctcccattattcctctctttcctgtaataaagaaggatctc
acatttctgcatgaaggcaatgactccaaagtggatggtttggtgaattttgagaagcta
agaatgatagcaaaagagatacgtcatgttggccggatggcttctgttaacatggatcct
gccctgatgttcaggacgaggaagaagaaatggaggagtcttggatctctcagccaggga
accaccaactctgcagtgttggatgttgtccagaccggaggacataagaagcgcgtgcgt
cgaagctctttcctcaatgccaagaagctgtacgaggatgcccagatggcccgcaaggtc
aagcaatacctgtcaaacctgaccctggataccaatgaagaaaaccttcagaccatctcc
ttgcagtgtgagccttccaccaatacattgcctaagagtggagacaaaaagggcgggaag
ccagacacatctcctgttgttcctagagcggcaagtcagcagaaacagcagcagcagcag
aagggaaatcaggcacttcaggtccctgctgtttcactctatccctctcgcaagaaagta
ccggtcaaggatctaccaccatttggtaccagttcacctcaagccttgaagaaaatcctg
gccttgtcagaagaagcaggtgaccgacataaaaagcaaccagaggacaccatatcaaat
gctgcttcacacctgccttcccctcccacatcccctcaaagctcacctaggaagggttat
acgttggctccaagtggaactgtggacaatttttcagattcaggtcacagtgaaatttca
tcccgttccagtattgttagtaactcctcctttgacttaatgccgggtctcatgcatgac
gataagagacagaggcactctgtcagtgttgtggattccagcctgggtgtgggaaggatg
gaaagaagagccacgatagatcctgatcaatacagccttggttcatacgcgttgatgcga
gagggacggaatctgtatcctggggctacagtcctctcttccccgagttcagaagaactt
acccaggaccagggggaccgagcctcgcttgatgcagcagacagcggtcgaggaagctgg
acttcatgttcaagtggatcacatgacaatatacaaaccatacaacaccagaggagctgg
gaaacgctgacttttgcgcatcctcattttgacaactcggcagaaggggctggactttgg
gcttcaggctgtcaaatagaccagatgatgtactcagactccagctctaagctgagccga
aacagccaggatcacggacaaggcagagggagctgggcatcctccaccggctactggggg
gaagactctgagggggacaccggaacaataaagaggaggggtgggaaagatgttaacgct
gatgctgaaacaagcagtatcatgtctaatacttctgaagacacaaaacaacatagtaga
ccttctcatataactgcaccatctggcactgcaaaaagtcttattgcacgaaaggaaggc
aggtatcgtgaacctccaccgactccaccaggctatactgccttgacagtttcagacttt
ccagagggccaggcacacccaggaaggaagccccccgattacaacgtagcactacagcgg
tcacggatggtgacacgctcctgcgacccccaacagacacacagtcacccaggaaccagg
ccagtgagccgaccgcaatggcacaaaccaaacgaagtagacccacgactatctcgcttc
cagtcccaagggttctcggctgaggaggaggatgaagatgaacaggtgtctgcagtctga
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integrated database retrieval system
