Polyodon spathula (Mississippi paddlefish): 121322865
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Entry
121322865 CDS
T07273
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121322865 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121322865 (trip12)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121322865 (trip12)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121322865 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
121322865
NCBI-ProteinID:
XP_041119238
LinkDB
All DBs
Position
11:35491177..35524295
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AA seq
2076 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDAVGGRLHSEQAKHKANSPPENRRSLSKTSKVQ
SNTASGQSRGHSSKRSNISSAVDPDTASTSERHKSGQPKRDSSRGVKRNSSPEFNSTYSP
SPAKKPKALQSTESSSEAKRVPAKSKKRQLAKDQQPKPEQLASTSKAPNRKSGATGGSPT
QKRNKIDNSSNLKSGAGSHSTCAEERSAKPTKLASKSATSAKAGCSTVTDSSSSASTSSS
SSTAVPQGARVKQGKDQNKARRSRSASSPSPRRSSREKEQNKTAGSSKFEWPRFSPKVTL
PKPKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSLRRSTRQKTTGSC
ASTSRRGSGLGKRGAAEARRQEKMADSDNNQDGANSSAARTDEAPQGASASSSVAGAVGM
TTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASSKAQQLLQGL
QATGDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFDIMNHASRAL
TYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSKAILQAGGLAD
CLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLTQRLTHQDKKSVESTCLC
FARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVRMFSLLCSNCPSL
AVQLMQQNIAETLRFLLCGASNGSCQEQIDLVPRSPQELYELTSLICELMPCLPREGIFA
VDTMLKKGNTQNTDGAVWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISLSTLGRVYTI
DFNSMQQINEDTGTARAIQRKPNPLANSNASGHLEVKKEDARAQLMKEDPELAKCFIKTL
FGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVSSHIASMLSSQDLKI
VVGALQMAEILMQKLPNVFGVSFRREGVMHQVKNLAESETLLTSPPKACTSGIGSMCTTT
ISTATTTAAANAIPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRGPRRPKYSPPR
DDDKVDHQAKSPTTTQSPKSSFLASLNPKTWGKLSTQTNSTNSELPRTAGVSGLARVPPK
DSVSNNRDKIRAWIKEQASKFVECYFSSENVDTSNPALNVLQRLCTATEQLSLQVDGGIE
CLVEICNIVSESDVSSFEIQHSGFVKQLLLYLTSRSDKDTVNRDVRLKRFLHVFFGCPPP
GLEGHGRLEPLENGPLMALVHKMNNCLSQMEQFPVKVHDFPSGNGTGSRGSQALKFFNTH
QLKCQLQRHPDCSTVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDSDDDGSDD
EIDESLAAQFLNSGNMRHRLQFYIGDHLLPYNMTVYQAVRQFSIQAEEERESTDDESNPL
GRAGIWTKTHTIWYKPVREDEDSNKDVVGGKRGRAQTAPTKTSPRNAKKHDELWHGRNSF
VDFLCIKAMVHLNADLTSFIFFADGVCPTVANPLEIYLLSVPPENITFEDPSLDVILLLR
VLQSISRYWFYLYDNATCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPPWLTELGK
TCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRE
ELLKQAESVMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRSDLGLWRGEEVA
LSNPKGSQEGTKYVFSSQGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDL
PLGLPFYKWMLRHESSVSSHDLVNIDPGVAKSIHHLEDIIRQKKKLEQDRTQSRESLQQS
LEGLNMNGCSVEDLGLDFTLPGFPNIELKKGGKDVSVNIHNLEEYLRLVVFWTLNEGVSR
QFESFREGFESVFPLQHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYNHDSRAV
KFLFEILSSFDAEHQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSV
MTCVNYLKLPDYSSIDIMRQKLLIAAREGQQSFHLS
NT seq
6231 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccagccacaagacgacgcagttggaggaaggttacactcagagcaggcaaaa
cataaagcaaattccccacctgagaatagaagatcactttctaagacatcaaaagtgcag
tccaatacagcctctggacaatccagaggacacagctctaaaagaagcaatatttcatca
gcagtagacccagatacagcaagtacttcagagagacacaagagcggacagcctaagcgt
gacagctcccgaggagttaaacgcaattcgagtcctgaattcaacagcacgtactctccc
agcccagccaagaagcccaaagcacttcagtccactgaaagctcttctgaggcaaagaga
gtcccagctaaatctaagaaaagacagttggcgaaagaccagcagccaaaacctgagcag
ttggcatcgacaagtaaagcccctaacagaaagagtggagctactggtggctccccaact
caaaaaagaaataaaattgataattcctctaatttaaaaagtggtgctgggtctcattca
acctgtgctgaagagaggtctgcaaaacccaccaagctggcttcgaaatcagcaacctca
gccaaagctgggtgtagcactgtcacggattcttcctcttcagcttctacatcctcttcc
tcttccacagccgtacctcagggcgcccgggtcaaacaaggaaaagaccagaacaaggca
aggcgttcccgctcggcctccagccccagcccccgtcggagcagccgcgaaaaggagcag
aacaaaactgccggctcttcaaagtttgagtggccccgctttagccctaaagtcaccctg
ccaaaaccaaaactgtctctaccagggtcttccaagtcggagacttcaaaacctgggcct
tctggacttcaagccaaactagcaagcttgagaaagtccacaaagaaacgcagcgagtcc
ccaccagcagagctccccagtttacgacggagcacacgccaaaagaccacgggctcctgt
gctagtaccagtcggcgaggctctggcctgggcaaacggggtgcagctgaagctcgccga
caggagaaaatggcagattctgataacaaccaggatggagccaattcttcagctgcacgc
acagacgaggcaccccaaggagcatcagcttctagttcagtggctggggctgtaggaatg
accacctcaggagagagtgagtctgatgactcagaaatgggtagactacaagctctctta
gaggctcggggccttcctcctcacctttttggtcctcttggtcctcgaatgtcgcagctt
ttccacaggacgattggaagcggggcaagctccaaggcccagcagctccttcagggtctc
caggccactggtgacgagtctcagcaacttcaggctgtaattgagatgtgtcaattactg
gtcatggggaatgaggaaacattgggggggtttccagttaagagtgttgtaccagcattg
ataaccctactacaaatggagcataattttgacattatgaaccatgcatcaagagctttg
acatacatgatggaagcacttcccaggtcatcggctgtggtggttgatgctattcctgtc
tttctggaaaagttgcaagttatccagtttattgatgtggcagaacaggctctgacagct
ctggaaatgctgtcacgtagacacagcaaggcaattctacaggctggcggtttggcagac
tgtttgctgtatctggagtttttcagcatcaacgctcagagaaatgccctggcaattgct
gccaactgctgccaaagcatcaccccagatgagttccactttgtttcagattcactgccc
ttactcacccagaggctaacccaccaggataaaaaatcggttgaaagcacttgcctctgt
tttgcccggcttgtggacaattttcagcatgaggagaacttgctgcagcaggttgcatcg
aaagatttgttaacaaatatccagcagctcttagttgtgactcctcccatcttgagctca
ggcatgtttattatggtggtgcgcatgttctctctattgtgttccaactgccccagtctg
gccgtgcaactcatgcaacagaatatagcagaaactctccgtttccttctgtgtggagct
tcaaatggcagttgccaagaacagattgatcttgtaccacgcagcccccaggaactctat
gagcttacttctcttatctgtgagcttatgccatgcctgcccagagagggaatctttgca
gtcgatacaatgcttaaaaagggaaacactcagaacacggatggtgcagtctggcagtgg
cgagatgacagaggcctgtggcatccatataacagaattgacagtcggataattgagaca
gctcatcagaatggtgaagatgagattagcttgtccaccctcggacgtgtttatactatt
gattttaattctatgcagcagatcaatgaggatacagggacggctcgagcaattcagaga
aaacccaaccctttagccaattccaacgctagtggtcatttagaagtgaagaaggaagat
gccagggcacagctgatgaaggaagaccctgaactggcaaaatgctttataaaaactttg
tttggtgtgctgtatgaagtgtacagttcttcagctggacctgcagtcagacacaagtgc
cttagagcaattcttaggattatttattttgctgatgctgaacttctaaaagatgtgcta
aaaaatcatgctgtatctagtcacattgcttccatgctgtccagtcaggatctgaagatt
gtagttggagctctacaaatggcagagattttaatgcagaagttacccaacgtatttggt
gtttctttcagaagagaaggtgtgatgcaccaggtgaaaaatctggctgaatcagagact
ctccttactagccctcccaaggcttgcactagtgggattggaagtatgtgtacaactaca
attagtacagcaactaccactgctgcagccaatgcaatcccagacctaggctctcccagc
ttccagcacagcatggatgattctctggatctgagtccccagggtcgattaagtgatgtc
ctaaagagaaaacggctgccaaagcgtggtccaagaaggccaaagtattctcctccaaga
gacgatgacaaagttgaccatcaagctaagagtcctacaaccacacagtctcccaaatct
tccttcttggcaagtttgaaccctaaaacatggggaaaattaagcactcaaaccaacagc
accaattccgaactgccacgcacagctggagtcagcggtctggcacgggttcctccaaaa
gactctgtatccaataacagggataagattagggcttggataaaagagcaggccagtaag
tttgtggaatgctacttcagctccgagaacgtggatacaagcaatcctgcactgaatgta
ttacagagactttgcactgctactgaacaactcagtctacaggtggatggtggaattgag
tgccttgtagaaatctgcaatatagtctccgagtcagatgtgtcctcgtttgaaatccag
cacagtggatttgtaaaacaactgctgctttatttgacctccagaagtgacaaagacact
gtgaaccgtgatgtcagattaaagagattcctgcatgttttctttggctgtccgccccca
ggactagaaggtcatggacgattagagcctttagaaaatggacctctaatggctcttgtg
cacaaaatgaacaactgtcttagccagatggaacagttccctgttaaagtgcatgacttc
cccagtgggaatggaacaggaagcagaggatcccaggccttgaaattcttcaacacccat
cagctaaaatgccagcttcagagacatccagactgtagtaccgtaaaacagtggaagggt
ggcccagtgaaaatagatcctttggctctggtacaggctattgaaagataccttgttgtc
agagggtatggaagaattcgagaggaagatgaagacagtgatgacgatgggtcagatgac
gaaattgacgaatctctggctgcacagtttttgaattcaggaaacatgaggcacaggcta
caattttacattggagaccacttactaccgtacaacatgacagtgtaccaggcagttaga
cagtttagtatacaggctgaagaggagcgcgagtccacagacgatgaaagcaacccctta
ggaagggctggaatctggacaaagacccatacaatatggtacaagccagtgagagaagat
gaagatagcaataaggatgtggttggtggaaagagaggacgtgcacaaaccgcaccaact
aaaacctcccctcgaaatgcaaaaaagcatgatgaactgtggcatggtaggaacagtttt
gtggattttttatgtattaaagcaatggtgcatttaaatgcagacttaaccagttttatt
ttttttgcagatggggtgtgtcctacagtggcgaacccattagaaatttacctcctttca
gtcccacctgaaaacataacatttgaagatccttctcttgatgtgatcctactactaaga
gttcttcaatcaataagcagatactggttttatctttatgataatgccacctgcaaagag
attattcctaccagtgagtttataaacagcaaacttactgcaaaagctaaccggcaactt
caagatcccttggttatcatgactggtaacatcccaccgtggctaacagagcttgggaag
acctgcccatttttcttcccctttgatacccgacaaatgctgttttatgtgacagccttt
gatcgagatcgggccatgcaacggttactggacacaaatccagaaattaatcagtctgat
tcccaagacagcagagttgcaccacgattagacaggaaaaagcgcactataaaccgtgaa
gagttattgaaacaagctgaatcagtaatgcaagatcttggcagctcaagagcaatgttg
gaaatacagtatgaaaatgaagttggaactggcctgggacccacattggagttttatgca
cttgtatctcaggaactgcagagatctgaccttggcttatggagaggagaggaagttgcc
ttgtcaaacccaaaaggaagccaggaagggaccaaatacgtcttcagttcacaaggtctg
tttgctgttccttttggaaggacgactaaaccggctcatattgccaagattaagatgaag
ttccgttttctgggaaaattaatggccaaggccatcatggatttcagattgttggacctt
cctcttgggctgccattttacaagtggatgctgcgtcatgagtcctcagtcagctcccat
gacctcgttaacattgatcctggcgtagccaaatcaattcatcaccttgaggacatcatc
aggcagaaaaagaaactggaacaggataggacacagtcaagggaatctctgcagcagtct
ttggaaggtctgaacatgaacggctgctctgtggaagacttgggtcttgacttcactttg
ccagggtttcctaacattgagttgaagaaaggaggcaaggatgtctcagtaaacatccac
aatctagaagagtatctaaggttggttgtgttctggaccttaaatgaaggtgtttctagg
cagtttgagtcattcagggaaggattcgagtcagtcttccctctgcagcacctgcagtat
ttttatcctgaagagctggatcaattgctttgtggtagcaagtcagagacctgggatgtt
aaaacattaatggagtgctgtagaccagaccatgggtataaccatgacagtcgtgcggtc
aagttcctgtttgaaattctcagcagttttgatgctgagcaccaaaggctgtttctacag
tttgttactggtagtcccaggctaccggtaggaggcttcagaagtttgaaccccccgctg
acaattgtccgcaagacatttgagtctacggagaatcctgatgattttctgccctccgta
atgacctgtgtcaactatctcaagttaccagactactctagtattgatataatgcgtcaa
aaactgttgatagctgctagagaggggcagcagtcattccatctctcctga
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