Polyodon spathula (Mississippi paddlefish): 121322880
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Entry
121322880 CDS
T07273
Name
(RefSeq) F-box-like/WD repeat-containing protein TBL1XR1 isoform X1
KO
K04508
transducin (beta)-like 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121322880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121322880
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
121322880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_SPT8
LisH
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_EIPR1
WD_LRWD1
Beta-prop_HPS5
B-prop_COPA_B_2nd
WD40_like
RMC1_N
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_NWD2_C
PD40
Motif
Other DBs
NCBI-GeneID:
121322880
NCBI-ProteinID:
XP_041119317
LinkDB
All DBs
Position
11:complement(37806769..37861600)
Genome browser
AA seq
514 aa
AA seq
DB search
MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYV
EAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAVTTANQ
QGAAKNGENTANGEENGAHALANNHADMMEVDGDVDIPQNKAMVLRGHESEVFICAWNPV
SDLLASGSGDSTARIWNLSENSSSSSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLL
ATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAQTGEA
KQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPT
GNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASF
DSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagcagtgatgaggtcaacttcttggtgtacagatatctacaggagtcaggt
ttctcccattcagcattcacttttggtattgagagccacatcagtcagtccaatataaat
ggtgccctagtgccccctgctgctctcatttctatcatacagaagggcttgcagtatgta
gaagcagaagtcagcatcaatgaggatggtaccctttttgatggcaggccgatagagtct
ctttctctaatagatgccgtgatgcctgatgtggtacaaaccagacagcaagcttacagg
gacaaacttgcacagcagcaagcagcagcagcagcagctgctgtcaccacagccaatcaa
caaggagctgcaaagaatggggaaaatactgcgaatggggaagagaatggagcacatgcc
ttagcaaataaccatgcagacatgatggaggtagatggagatgtagatattcctcagaat
aaagctatggtattgcgtggccacgagtcggaagtttttatctgtgcttggaatccagtc
agtgacctccttgcatctgggtctggtgattcgacagcacgtatctggaaccttagtgag
aacagcagcagcagctcaactcaacttgtactcagacattgcatacgggaaggggggcag
gatgtaccaagtaacaaagatgtcacttcattagactggaatagtgaaggcacgctacta
gcaacaggttcttatgatggatttgccagaatatggactaaagatggtaaccttgccagc
accttgggtcagcacaaaggccctatttttgctttaaaatggaataagaaaggaaatttc
attcttagtgctggtgttgataagactacaatcatttgggatgcacagactggagaagcc
aagcagcagttccctttccactctgcaccagcactagatgttgactggcaaagtaacaat
acatttgcctcatgcagtacagatatgtgcatccatgtctgtaaactgggacaggacaga
cccatcaagacattccaagggcacacaaatgaagttaatgctattaagtgggatccaact
ggtaacctactggcatcctgctctgatgacatgactctaaagatatggagcatgaaacag
gataactgtgtccatgacttacaagcgcacaacaaagagatatacactatcaaatggagc
ccaacaggacctggcacaaacaacccaaatgccaatcttatgttagcaagtgcatcattt
gactctactgttcgattatgggacgtagaccggggaatctgcatccacacactgaccaaa
catcaggaaccagtgtacagtgtagcctttagcccagatggcaggtacctagccagtggc
tcttttgacaaatgtgtacacatctggaatacacagacaggtgctctagtccatagctac
aggggaacaggagggatctttgaggtttgctggaatgcagcaggagacaaagttggagca
agtgcatcagatggatcagtttgtgtattagatcttcggaaataa
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