Polyodon spathula (Mississippi paddlefish): 121322926
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Entry
121322926 CDS
T07273
Name
(RefSeq) integrin beta-5-like
KO
K06588
integrin beta 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04145
Phagosome
pspa04148
Efferocytosis
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04810
Regulation of actin cytoskeleton
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121322926
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121322926
04148 Efferocytosis
121322926
09144 Cellular community - eukaryotes
04510 Focal adhesion
121322926
09142 Cell motility
04820 Cytoskeleton in muscle cells
121322926
04810 Regulation of actin cytoskeleton
121322926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121322926
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121322926
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
121322926
Cell adhesion molecules [BR:
pspa04515
]
Integrins
Integrin beta subunits
121322926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
EGF_integrin
Integrin_b_cyt
PSI_integrin
I-EGF_1
EGF_2
vWA_SIBA-E
EGF_Teneurin
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
121322926
NCBI-ProteinID:
XP_041119483
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All DBs
Position
11:complement(5368041..5413722)
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AA seq
802 aa
AA seq
DB search
MLESKNLSHVVLVTYLVLELLIQNVKGLNICMSGSATSCEGCLLIHPVCAWCAQEEFGSS
RTVTSRCDYRESLLKRGCEKHFIHSPGSSMAVLKNTPLSSKGSAPTQYDVIQIMPQKIAL
SLRPGDQTSFGVQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLAEEMKKLTSNFR
LGFGSFVDKNISPFSYTAAKYRNNPCNGYKLFPNCVPSFGFRHLLSLTDKVDRFNEEVQK
QLVSRNRDAPEGGFDAILQAVVCKDKIGWRKEAFHLLVFTTDDVPHLALDGRLGGVVQPH
DGQCHLNEKNEYSGSTKMDYPSLALLGEKLAENNIYLIFAVTKRLYVIYKNFTALIPGTT
VEILDQDSKNIIQLIINAYNSIRSKVELTVWDHPEDINLSFTATCQDGRPRPGLRKCGDL
KIGDTVSFNVSVDARGCPAEDTRHKFTIKPVGFKDTLEVTVNYKCTCGCTKEMESNSTKC
SSIGTYQCGICSCDPGYLGARCECQEGEDSMYQTMCREAEGKQLCSGRGECSCNQCLCYE
SEFGKIYGTFCECDDFSCARHKGILCSGRGECHCGECKCHAGYIGDNCICSTETDTCLSN
DGQICSGRGNCFCGECQCSEPGAFGDTCEKCPTCPDACGTKRECIECRLFNSGRLANNQT
CDRLCTDEIITVDTLNTDDQNAVLCLYKTENDCVMKFTYSEHASGQSVLAALKEPECGTP
PDALTVLLAVVGSILLVGIVLLAIWKLIITVHDRREFARFQSARSRARYEMASNPLYKQP
ISSHAVETVFNMQNKLYNGTVH
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaagcaaaaatttatctcatgttgtattagttacctatttggttttggaatta
ttgatccagaatgttaaaggtcttaatatttgcatgagtggcagtgctacctcctgtgaa
ggatgccttctcatccacccagtctgtgcctggtgtgcgcaagaggaattcggcagtagc
aggacagtcacatcaagatgcgactacagggaaagcctgttgaagaggggctgtgagaag
cactttatccacagtcctggaagcagcatggcggtgctcaagaatacgcctttaagttcc
aagggctcagctcccacccagtacgatgttattcagataatgcctcagaagattgctctc
agcctgagacctggtgaccagacctcttttggggtgcaggtgcggcaggtggaggactat
cccgtggatctctactacctgatggacctctccctctccatgaaggacgacctggacact
atccgcaacttgggcaccaaactggcggaagaaatgaaaaaactcaccagcaattttcgt
ctgggctttggctcgttcgtggacaaaaatatatcgccgttctcctacacagcggcaaag
tatcggaacaacccctgcaatggatacaagctgttccccaactgcgtcccgtcttttggg
ttccgccacctcctctccctgactgacaaagtggaccggttcaacgaggaagtgcagaag
cagctggtatctcggaacagggatgctcctgagggggggtttgacgccatcctccaggcc
gtagtgtgcaaggacaagattggctggaggaaggaggcgttccacttgctggtcttcacc
acggatgacgttccacacctcgcactggacggcaggctgggcggagtggtccagccacac
gacgggcagtgtcacctgaacgagaagaatgagtacagcggctccacaaaaatggattat
ccatcacttgcactcctgggggaaaaactggcagaaaacaacatctatctcatcttcgct
gtgacaaaaaggctgtatgtgatttacaagaactttactgcactgataccagggacaact
gtggaaattcttgaccaggactccaagaacataatacagctgatcatcaatgcctataat
agtatccgttctaaagtggagttgacagtctgggatcacccggaagacattaacctgtct
ttcacagccacctgtcaggacggacggccacgcccagggctcaggaagtgcggggacctc
aaaattggggacactgtctctttcaatgtgtctgtggatgccaggggctgtcctgctgag
gataccaggcacaagttcaccatcaaacctgtcggatttaaggatactctggaggtcacc
gtcaactacaagtgtacctgcggatgcaccaaggagatggagagcaacagcaccaagtgc
agcagcatcggcacctaccagtgtggcatctgcagctgtgatcctgggtacctgggagcc
cggtgcgagtgccaggagggggaggacagcatgtaccagaccatgtgccgggaggccgag
gggaagcagctctgcagtggcaggggggagtgcagctgcaatcagtgcctctgctatgag
agcgagtttggaaagatatacgggacattctgtgagtgcgacgacttctcctgcgcccgg
cacaaaggcattctctgctcaggtcgtggggaatgccactgtggagaatgcaagtgtcac
gccggctatatcggagacaactgtatctgctcgacggaaacagatacgtgtctctccaat
gacggtcagatctgcagcggccgggggaactgtttctgcggggaatgccagtgcagcgag
ccgggagctttcggggacacctgcgaaaaatgccctacctgccctgatgcctgtggcaca
aagagggagtgcattgagtgcaggctgtttaactcaggaaggcttgccaacaaccagacc
tgtgacagactctgcacggatgagatcatcacagtggacacactcaatacagatgaccag
aatgcagttctgtgtctgtataaaactgagaacgattgtgtgatgaagtttacgtactca
gaacacgccagtggccagtcagtcctcgctgcactcaaagagcctgagtgtggcactcct
ccggacgcgctcacggtgctcctggccgtcgtcggcagcatcctgctggtcggcatcgtg
ctgctggcgatttggaagctcatcatcactgtccacgatagacgggaatttgccaggttc
cagagcgcccgttccagagccagatacgagatggcttccaatcccctgtacaagcagccc
atctctagccatgctgtggagactgtgtttaacatgcagaacaagttgtacaatggcacg
gtccactga
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