Polyodon spathula (Mississippi paddlefish): 121323000
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Entry
121323000 CDS
T07273
Name
(RefSeq) autophagy-related protein 16-1-like isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04136
Autophagy - other
pspa04140
Autophagy - animal
pspa04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121323000
04136 Autophagy - other
121323000
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121323000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121323000
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121323000
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
121323000
Others
Specific organelles associated proteins
Auto phagosome
121323000
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121323000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
WD40_RFWD3
eIF2A
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_Vps41
DUF4200
ADIP
PUMA_CC
Lipoprotein_6
HALZ
TolB_like
HEF_HK
PALB2_WD40
APEH_N
CCDC93_CC
DUF7310
Motif
Other DBs
NCBI-GeneID:
121323000
NCBI-ProteinID:
XP_041119637
LinkDB
All DBs
Position
11:43055649..43088628
Genome browser
AA seq
622 aa
AA seq
DB search
MSGVECRTECTWKRHIAEQLKQRDRVQRQAFEEIIHQYNRLLEKSELQAVLSERLQTDKF
DSHSRHDLSPGHDGVRSEALLQEMAQIKIKHQEELTELHKKRGELAQSVIELNNQMQQKD
KEIQANEAKMAEFQQQISQLESECRELRSNLQDLETANQTLKDEYDALQITFSALEEKLR
RTTEDNQELVSRWMAEKAQEANQLNAENEKDCRRRQAKLQKELADAAKEPLQLDLDDDIE
VLSDDTAEPGGETSPGKTITRTPSKRASQPPGGLLDSISNIFGLSESPILGHRIPVITRR
RSVNSYGSSPESTEVHTGVCTEVRVPTTALHVFDAHDGEVNAVRFSPGSRLLATGGMDRR
VKLWEIVLGRCELKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDFRLRHTLT
GHSGKVLSARFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSG
HFDKKVRYWDIRAESIVRELELFGRVTSLDLNPDRTELLTCTRDDLLKIIDLRTNTVKQT
FSVQGFKCGSDWTRVMFSPDGSYIAAGSADGTLYVWNVLTGKVEKALGKHHSSSINAVAW
SPSGAHVVSVEKGSKAVLWSDL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggtagaatgccggactgagtgcacctggaagagacacatagcagagcagttg
aagcaaagagaccgggttcagagacaggcttttgaggagattatacaccaatataataga
ctgctggaaaagtctgagctgcaagctgttctttcagagaggcttcagactgataaattt
gacagccacagcagacatgacctcagccctggtcatgatggagtgcggagtgaagccctg
ttacaggagatggcccagattaagatcaaacaccaagaggagctgacagagctgcacaag
aagcgtggggagctggcccagagtgtcattgagttgaataaccaaatgcaacagaaagac
aaggagatccaggcaaatgaagcaaagatggcagagttccagcagcaaatctcccagctg
gagagcgagtgcagagagttgcgttcgaacctgcaggacctggagacggccaaccagacc
ctgaaagacgagtacgacgccctgcagatcaccttcagcgctttggaggagaagctgcgg
cgcaccaccgaggataaccaggagctcgtctcccgctggatggctgagaaagcacaggag
gccaaccagctcaacgccgagaacgagaaggactgcaggagaaggcaagccaagttgcag
aaggaactggctgatgcagcaaaggagcccttgcaattggacctggatgatgacattgag
gtcctgtccgatgatactgctgagcccgggggggagacatcacctgggaagaccatcacc
cgcacacccagtaaacgtgcctcccagccacccggaggccttctggactccatcagtaat
atctttggcctctctgagtctccaattcttggacatcgcatccctgttatcacaaggcgt
cgatctgtcaattcttatggcagctcccctgaaagcacagaggtacacacaggagtgtgt
acggaggtccgtgtgcccaccactgctctgcatgtatttgatgcccatgatggggaagtg
aatgcagtgagattcagcccgggctctcgcctcctggcaacggggggtatggacaggaga
gtgaaactatgggaaattgttttaggtcgttgtgaactgaaaggagctctcacaggcagc
aatgctggaatcaccagtatcgagtttgacagcgcgggctcctacttgcttgctgcctcc
aatgattttgccagcaggatttggacagtggatgacttcaggctgcgtcacactctgaca
ggtcacagcgggaaggtgctgtccgctcgcttcctattggataacgctcgcatcgtctca
ggcagccatgaccggacactcaaactctgggacctccggagcaaagtctgtataaagact
gtgtttgcgggatcgagctgcaatgacattgtctgtactgagcagtgtgtcatgagtggc
catttcgataagaaagtccgctactgggacatcagggcagagagtattgtgcgtgagttg
gagctgtttgggagggtcacatctcttgacctaaaccctgacagaacggagctgctaacc
tgtaccagagatgacctgctgaaaatcattgacctgcgaactaacacagtgaagcagaca
ttcagcgtgcaaggcttcaagtgtggctccgattggacgagagtgatgtttagccctgac
ggtagctacattgctgcaggttctgctgacggcactctgtatgtgtggaatgtgctgacg
gggaaagtggagaaggcgttgggaaaacaccacagctcatctatcaacgctgtggcctgg
tccccctctggagcccatgtggtcagtgtcgagaagggcagcaaggccgtgctctggtct
gatctctga
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