Polyodon spathula (Mississippi paddlefish): 121323005
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Entry
121323005 CDS
T07273
Symbol
dchs2
Name
(RefSeq) protocadherin-23
KO
K16507
protocadherin-16/23
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121323005 (dchs2)
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Cadherin related
121323005 (dchs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
CADH_Y-type_LIR
Herpes_glycop
RIFIN
Motif
Other DBs
NCBI-GeneID:
121323005
NCBI-ProteinID:
XP_041119651
LinkDB
All DBs
Position
1:80887197..80940669
Genome browser
AA seq
3275 aa
AA seq
DB search
MDTLRTHSSLTQASVFLKTIILVVLSLCNKSCAQVYNLSLSIEEGLPAGTIVGDIRTGLP
NGTPNSGFFISESRESYFFKDLDIDGDSGIISTTKALDRESRGKYEFVAATLTGEMVQVE
ILIIDVNDHSPVFPKEKVQLNISEQSPSMSRFQLEGALDLDEGEFGIQGYRITEGDPSGM
FRLEYRSRSNRDLSVDLILSGKLDRESIDFYSLGINAFDGGNPPKTGNLQVDIVVLDEND
NPPVFNQAKYEVLVWENAPLTASVCQVYATDQDLGSNGNVIYEINRRQSDPNELFVINNK
TGVISLNKPLDYENQPFHELIIQARDDGAQPEYSSTFVLVKVLDINDNSPTINIMFLSES
GEPKVSEEANIGDYVARISVSDPDLGEQLKVHVSLEGGDGKFTLKPSDDFLYFLCVNGSL
DREKLDLYELRIVASDFGVPPLWSEKTFLITVTDINDSPPVFEQDIFTVNVSEAASRGTA
LLQVHAKDSDEGISSVVYYAVVNLLDTYMFAVDSMSGLITTVSPLDHEKQHLIHLLVVAT
DAGSPPLSSTATIAVHVEDVNDNKPVFEHQVYNASVLEHSPVGSCFLQVTATDADSDEFG
KVRYSLYDGFNNYEKSHILRVDADSGQVCISQDIDRDGGLANFDVLVKAEDGGGLSAQAY
IHIEVEDVNDSRPVFNPLRYITSISSHTQPGTEVLNIIATDSDAGTNGQVSYELVPGDLS
FLFTVDTSTGILYLTSTLSHLGSTSVELSVSAQDGGGLSSLLNAAVTVNIVRSALAPAVF
ERLRYAFAVPEDAKKGTAVGTVQATTPSNSLESLSYRISSGDPNGLFSIHPEFGMISTNG
PLDHESQPYVILMVQSQTGSSPVYSSTQVNITIIDVNDNLPVFYKESETITVSQNTLPGT
VLYIAHAEDRDSGHNGRIRYALQTDNTKVFTIDVRHGTVSLNRSLSQDTQPRYLLKISAE
DEGDPPQSSVFTLVVNIDRTKLEDTLAFETLIYQVEISENAQTDTRLIQVRAHGRDPQTY
SSLSYSLQTISGSPVFGIHLDSGWIYLRQSLNYESTSTYKFEVSATAMEERMVLQATATV
TVNVLDENDNAPVFSQESYFFTIQEGPIPHGLVGSVKAADIDSGRNAQMSYILLSEGKYF
RINSKTGEIINWVALDREQRTHHTLSVLVTDQGVPRLNATTTIYIIVTDINDNPPQFTHM
PTGKEINVQVWEGQAAGTVVATLFAKDLDAGMNCHITISLYDGLGHFEIDSKTGEIKTTE
RLLQSSRIRYRLTVTARDKGPSPLEASAVVHIQIIPVDKGSSNNAEQVIRHFVIKEDSKL
GRAIGSLKLPNHHNQMVDYSISEGDGSLHFGVDRSTGDLHLAYELDYETASHYLLKVQAE
DHSQVPVHNTAVFVSVTVEDVNDHSPWFLDDFIVIGIEENLPAGSQVYTFNAKDGDGSLP
NSALRYKVTSSSMKETPFLIDPVQGILTTTALLDREETHTFILTVTATDQAVNLLDRKTC
SLTAKIAILDVNDNSPVFVSSHISYVMEDAEVGSLVHHTIAQDKDEGRNGKVTYSILSGN
EKGVFLLEETTGLLFLASSLDHEVLNSYSLSILASDSGYPALSATQTLTVSVVDVNDQVP
LFKETHYNASVPENHEPGEFVIRVAAVDRDSEMNAAVCYTLLPGSGHDLFTINSQTGEIT
TKAVLDREVQDHFSIRVLARDSGLPALSSTATIMCTVLDYNDNTPEFILPTFEIKIPENQ
EPEIIYTALASDEDAGENGIIEYGLVDESAGGHFVINSTTGALRTTEALDREERCNYTIV
IEARDLGTPQRSSTAELRITVLDVNDNSPEFSKTHYRTSVSEDLVVGSEVLQLTATDKDE
GSNGEVMYSLIDDTLGMFTINSSTGTVMTTMQLDRETKSQYVFRAVANDCSTQRPRSSTV
NVMVHIEDINDNAPVFIQNPVNGQVSMETALNQTIATVRADDSDLGQNGEVVFSFAEPDL
LFDINRQTGDIWLKSLIPSSEFGTKVLHVIAADQGIPVQNSSGLVMVHLQGEEPRIWFTQ
PVYKAAIPENSKSGSTVVTVTAHDRNKDARKIKYSIFSGNENEAFTINTDTGYISVKDHK
SLDFEMQDKIHLVVLAENTWQTAYCRITITIQDVNDNPPRFEQSYYKTAVWEGQIHNTYI
MQVFATDADSGLNGQIEYSILSGNQNEAFLIDTARGIVATNTILDREIFSSYKLILLATD
KGSPQLTATTTVRIQVVDVNDNAPAIPPMEPAEIAENLPAGYMVTQVSANDVDLSPALSY
SFADNGNPGGKFAIDPYTGVITLTESLDYEESPQYVLQIKASDSIHETGAELRVHVLDVN
DNPPVFSQESYQIVLAELTPMDTFVLALSATDRDSGLNGEVSYRLLSSASKGFYINLKNG
SLFTSKPLRYFMESSVVQLLVEANDGGDPALTAVTSVEIQIQDINDHAPQFMQATYQVSV
SEDAAVGSTVLYLSASDQDLSHENSYLDYTIFGGNEQNRFCIETSVLQADDEYKTVGKLV
LCNRLDRENTMNYTLVVVVSDRGTPPLNSSAVVSVTVLDANDNPPVFSRLEYHIQVSESI
PLGSRLTQVSAHDPDEGVNAEIKFHIVSGNDKGHFRLDHRSGAVELNQSLDYEENTKFTL
TIQATDGSSMGSRKIAFAVLFITVLDENDNSPYFMFPAMNCSILENQAAFTHVCSLYAMD
HDSGPFGQVTYSILSPCSVDYESPNKKEAFAIDSLTGDIYSKQTFDYERENRYCFMVQAK
DKGDQTATIMVQVDIESVDEFSPVFSRTEYYFELPENSEVGQSIGQVSAIDNDGGIDGVL
VYSLAESSQFFSVNRTSGTVYLTSAVYRKKGIAKKREDLIEFKVKASSPKFDSKSESCIV
IVNISNSAEAFTGMQLNSLTISLAISFVVFLLLAIILVALILRFRRKYVKVKTRTVDSMA
TSLNHSISDTLEKSNGHRHSTIVLQDLAEQVDIRDKKEVTNPCRHSGSSGRGSADGDAAE
DEEIKMINEHPCRKGSGSALNERASRVPDSGIPQDSDQFSCQSEEADLAVTTTATVANSS
ESIYHFKEEGGGEGCDQNYASNEVLSRRITGMAIKEKDVLAHSTKRYIFNTDGQSSARAS
LTSLVSAEEELRGSYNWDYLMNWEPRFQPLASVFTDIAELQDNGLQKPNIAKESRGIIYP
PPLITSVAQPGIRAVPPRLPTFTNRAAFPKYTQSPLTGKSGLTPSAMTPSFSPSLSLLTM
QTPTSSPVVSETGITGPSKRATLHPSTPREEDMQV
NT seq
9828 nt
NT seq
+upstream
nt +downstream
nt
atggataccttgagaacacacagctctttgacacaggcatctgtgttccttaaaacaatt
atccttgttgtgttatctttgtgcaacaaatcctgtgctcaggtgtacaatctgagcttg
tctattgaagaaggacttccagcagggacaattgttggggatataagaactggacttcca
aatggcactcccaatagtggatttttcatatctgagagcagggaatcttatttttttaag
gacctggatattgatggagactctggtataatttccacaacaaaagctctggacagggag
agcaggggcaagtatgaatttgtggcagctactctaactggagagatggtacaggtggag
atcctgataattgatgtaaatgaccactctccagtcttccccaaggaaaaggtgcagcta
aatatttctgagcagagtccttctatgtccaggttccagctggagggtgctctggatcta
gacgagggagagtttggcatccagggatacaggatcactgaaggggatcccagtggaatg
tttaggctggaatacagaagcaggagcaaccgtgatctcagtgtggatctgatcctgtca
ggcaaattggacagagaaagcattgacttctattccttaggcataaacgcttttgatgga
ggcaacccccccaaaactggaaatctgcaggttgacattgttgtcttggatgaaaatgat
aaccctccagtgtttaatcaggccaagtatgaggtgcttgtttgggaaaatgcacctctg
acagcctccgtgtgccaagtttatgccaccgaccaagatctcgggagcaacgggaatgtc
atctatgagattaaccgtcgccagagtgaccccaatgagctgtttgttatcaacaacaaa
actggtgtaatcagcctgaataaaccactggactatgagaaccaaccatttcatgagcta
ataatccaagcacgagatgatggagcccaacctgagtacagcagcacatttgttttggtc
aaagtgctggatattaatgacaatagtcctaccattaacatcatgttcctcagtgaatct
ggagaaccaaaggtctcagaggaagccaatattggagattatgtggccaggatatctgtg
tctgacccagatcttggggaacaactaaaggtccatgtgtccttggaaggtggcgatgga
aaattcactttgaaaccatctgatgattttctgtattttctttgtgtcaatggatctttg
gacagagagaagctggatttgtatgagttgaggattgttgcctcagattttggagttcca
cctctgtggagcgagaagacttttttgataacagtgacggatataaatgatagcccacca
gtgtttgaacaagatatatttacagtaaatgtatcagaagcagcatctcgggggactgcc
ctgcttcaagttcatgctaaagactcagatgaaggcatcagttctgttgtgtattatgct
gttgtgaatcttttggacacctacatgtttgctgtagactccatgtctggtttgataact
acagtttctcctttggatcatgagaaacagcacctcatacacttgctggtagtagccaca
gatgcaggaagcccacccttgtcttcaacagccacaattgctgtccatgttgaggatgtc
aatgacaacaaaccagtttttgagcaccaggtgtataatgcctctgtgctagaacattca
ccggttgggagctgttttcttcaggttacagccacagatgcagacagcgatgagtttggc
aaagtgcggtactctctatacgatgggttcaataattatgaaaaatctcacattttacga
gtggacgctgattctggacaggtctgcatatcacaagacattgacagggatggtgggctg
gcaaactttgatgttttggtgaaagctgaagacggggggggtctgagtgcccaagcttac
attcatatagaagtggaagacgtcaatgacagccgaccagtgttcaacccactaagatac
attacaagcataagcagtcacactcagcctggaactgaagtcctgaacattattgcaact
gacagtgatgctggaacaaatggacaagtatcttatgaacttgttcctggggatttgtct
tttcttttcacagttgacacatcaacagggatattgtatttgacatccactctgagccat
ctggggagcaccagtgtggagctgtctgtgtctgctcaggatgggggcggtctcagctcc
ctgctcaatgcagctgtcacagtgaacatcgtcaggagtgcactggcccctgcagtattt
gagagattacgatatgcgtttgctgtgccagaggatgccaaaaaggggactgctgtggga
acagttcaggctaccactccatccaattccctggagtccctatcctacagaatttcatcc
ggagatccaaatggcctcttctccatccaccctgagtttggtatgatcagcactaatggg
cctttggatcatgaatcccagccttatgtcatcctcatggtgcagtcccagaccgggagc
tccccagtctacagcagcacccaggtgaacataacaatcattgatgttaatgacaacctg
cctgtcttctataaagaatcagagacaatcacggtttctcagaacaccttgccaggcact
gtgctgtacatcgctcatgcagaggacagagacagcgggcacaatgggaggatcaggtat
gctctacaaacagacaataccaaggtgttcaccattgacgtcaggcatggaacagtttct
ctcaacagaagtctttcccaagacacgcagcctaggtaccttctgaaaatctcagcagaa
gatgaaggagatcctccacagagctccgtgttcacccttgttgtcaatattgaccgcaca
aaattggaagacaccctggcttttgaaactctaatttaccaggtggagatcagtgagaat
gctcaaacagatacaaggcttatccaagtccgagcccatggacgggatccacagacttac
tcaagcctgtcttactccctccagacaatttcagggtctccggtgtttgggatccatctt
gacagtggctggatttacctccgccagagcctgaactatgagtccacatcgacatacaag
tttgaagtgtcagccaccgcaatggaggagaggatggtcctgcaagccactgctaccgtc
actgtcaatgtgttggacgagaatgataatgctcctgtcttctctcaggaatcttatttc
ttcaccattcaagaaggccctattcctcatggattggttggctcagtgaaagcagcagat
atcgactcggggagaaatgcgcaaatgtcctacatcctattgtcagaaggaaaatacttc
cgcattaattccaagacaggtgaaataataaactgggttgcgctagaccgtgagcaacgc
actcaccacacactgtcggttttagtgacagaccaaggagtcccacgtctgaatgcaacc
accaccatctacatcattgtcaccgatattaatgacaacccacctcagtttacacacatg
ccgactgggaaagagattaatgtccaggtttgggaaggacaggctgcaggcactgtggta
gccaccttatttgcaaaagaccttgacgctggtatgaattgtcacattaccatatctctg
tatgatgggttggggcattttgagatagacagcaaaacaggagaaattaagacaacagag
cgtcttttacaaagctcaagaatccgctataggctgactgttactgccagggacaaggga
ccctctccactcgaagcatcagctgtagttcacatacagattattccagtggataaaggg
agctctaataatgctgaacaagtcatacgacattttgttataaaagaagattccaagctc
ggaagagctattggttcactcaaactacccaatcatcataatcaaatggtggattattcc
atctctgaaggggatggcagtcttcactttggggttgaccgctctaccggagacctgcac
ctggcctatgaactagactacgaaacagcttctcattaccttctcaaggtgcaggcggaa
gaccacagccaggtccctgtgcacaacacggcagtgtttgtcagtgtaactgtagaagat
gtcaacgaccactcaccctggtttttggatgactttattgtcattggaatagaggagaac
ttgcctgcaggttcccaggtttacacttttaatgctaaggatggggatggaagcttacca
aacagtgccttgcggtataaagttacgtcaagcagtatgaaggaaactccatttctcata
gaccctgtgcaaggtatattaacaaccacagccctcctcgacagagaagaaactcacacc
tttatcctaactgtgactgcaacagatcaggcggtgaacctcttagaccgaaagacatgc
tcacttacagccaagattgctattttggatgtgaatgacaacagccctgtttttgtgtca
tcgcacatttcctatgtaatggaagatgcggaagtgggatcgctggtccatcacactatt
gcccaagataaggacgagggtagaaacgggaaggttacttacagtatattgtcaggaaat
gaaaaaggagtctttctattggaggaaacaacaggactgctgtttttagcctcctccctg
gaccatgaggtattgaattcgtactccttgagcatccttgccagtgacagtggataccct
gctctctccgccactcagacactcacagtctccgttgttgacgtgaatgaccaagtaccc
ttgtttaaggaaacccattacaatgcttcagtacctgaaaaccatgagccgggagaattt
gttatcagagttgcagcagtcgacagggattcagagatgaatgctgctgtgtgctatacc
ctgctgcctgggtctggacatgacttatttacaataaactctcagactggagagattacc
accaaagcagtgctggacagggaagttcaagaccacttcagcatacgagttctggctcga
gacagtgggctacctgcgctctccagcacagccactatcatgtgtactgtcctggactac
aatgacaacacccctgagttcatactccccacatttgaaatcaagattccagaaaaccag
gagccagaaattatttacacagctttggcttcagacgaggatgccggagagaatgggata
attgaatatggattggttgatgaaagtgctggtggacattttgtcatcaattctaccact
ggggcacttcgtacaactgaagcattagacagggaagaaagatgtaactacaccatcgtt
attgaggcccgtgacctgggaactccacagcgaagctccactgccgagttgagaatcaca
gtcttggacgttaatgacaacagcccagagttcagcaaaacccattaccggacatcagtc
agcgaagacttggtagtggggtcagaggttctccagctgacagcaactgacaaagacgaa
ggttccaacggagaagttatgtattccctcattgatgatacccttgggatgtttactata
aacagctcaactggcactgtgatgaccaccatgcagctggacagagagaccaagtcacaa
tacgtgtttcgggcagtagcaaacgactgtagcacccaaaggccacggagttcaacagtc
aacgtcatggtgcacatcgaagacatcaatgacaatgccccagtttttattcagaaccca
gtcaacggccaagtttccatggaaacagctctaaaccagaccatagcaacagtaagagct
gacgacagtgaccttggccagaatggagaagtggtgttcagttttgcagagccagatttg
ctttttgacattaaccgtcagactggagatatctggttgaagagcttgattccatccagt
gaatttggaacaaaagtcctccatgtgattgcggcagatcagggaatcccagtgcagaac
tcttccggtctggttatggttcatttacagggtgaggagcctaggatctggttcactcaa
cctgtctataaagcagcaattcctgaaaatagcaaatctggttccacggttgtgactgtt
actgcccatgaccgtaacaaagacgcaaggaaaataaaatacagcatttttagtgggaac
gaaaatgaagctttcacaataaacacagacactggttacatttctgtaaaggatcacaaa
agcctggatttcgagatgcaggataagattcatcttgtggtcctggctgaaaatacctgg
cagactgcgtactgcagaataacaatcacaattcaagatgtgaatgacaacccaccaaga
ttcgaacaaagttactataaaacagcggtgtgggaagggcaaattcacaacacttatatc
atgcaggtttttgctactgatgctgacagtggccttaacgggcagatagagtattcgatc
ctctctggtaaccaaaatgaggccttcctcatagacacagcccgaggcattgtagccaca
aacaccattctggatcgagaaatcttttcatcgtacaagctgattcttttggctactgat
aaaggcagcccccaactgactgctaccaccacagtgagaatccaggtagtggacgtcaat
gacaacgccccagcgatccctccgatggagcctgctgaaattgctgagaaccttccagct
ggctacatggtaacacaagtatcagcgaatgacgtggacctgagcccagctctgtcctac
agttttgctgacaatgggaatccaggcggtaaatttgccatcgatccttataccggagta
atcacactgactgaatcgctggactatgaggaaagcccccagtatgttttacagatcaaa
gcctcggattctattcatgaaacaggagcagaactcagggtccacgtgcttgatgtcaat
gacaatccacctgtcttctcccaggagtcataccagatcgtattggctgaattgactcca
atggatacatttgttctggcactgtcagccacggacagagattcaggactcaatggagag
gtttcctaccggctcctttcatcagcttcgaaggggttttatatcaatttgaaaaatggc
tctttattcaccagcaagccgctgaggtattttatggagagctctgtggtacagctcctt
gtggaagccaatgatggtggagacccagctttgacagctgtgacttctgtggaaatacaa
atacaagacatcaatgaccacgcacctcagttcatgcaagccacataccaagtgagcgtg
tccgaagatgcagcagtcgggagcaccgtgctgtatctctcagcttctgaccaggacttg
tcccatgagaactcttaccttgactacaccatctttggtggcaatgagcagaacagattt
tgcattgagaccagtgttttacaggcagacgatgagtacaagacagtgggcaagcttgtg
ctgtgcaatcgcctggaccgcgaaaacacaatgaactacaccctggtggtagttgtctct
gatcgggggacacctccactaaattcttctgcagttgtctcagtaactgtgctagatgct
aatgataaccctcctgtcttcagccgattggaataccacattcaggtcagcgaaagcatt
cccctggggagtaggctcactcaggtgtcagctcatgacccagacgaaggagtcaatgct
gaaataaagtttcacattgtttctggcaatgataaaggacactttagactagaccacaga
agtggtgcagtggaactgaaccagagtttggattatgaagaaaataccaaattcacattg
accatccaagccactgatggcagcagcatggggagcagaaaaatagcctttgctgtgctg
ttcatcactgtgctggatgagaatgataactctccctactttatgttccctgccatgaac
tgctcaatcttggaaaatcaggctgcctttactcatgtttgctcactctatgcaatggac
catgattcaggcccatttggacaggtgacctactctattttgtcaccatgctcagtagat
tatgaaagtccaaataaaaaggaggcttttgcaatagactccttgactggggacatctat
tccaaacaaacttttgactatgaaagagagaataggtactgctttatggtccaagctaaa
gacaaaggcgaccaaacagcaacaattatggttcaggtggacattgagagtgttgacgag
ttcagccctgtcttctcacgaacagaatattactttgagctccctgagaactctgaagtg
gggcagagcatcggccaggtctcagccatagacaatgatggtggaatagatggggttctt
gtgtattccttggctgagtcctctcagttcttttcagtgaacagaaccagtggaaccgtg
tatctcaccagtgctgtctacaggaaaaaaggcattgccaaaaagagagaggacctaata
gagttcaaggtgaaagcaagcagtcccaagtttgattccaagtctgaaagctgcatcgtt
attgtcaacatctccaactctgcagaggccttcactggaatgcagctgaacagcctgacc
atcagccttgccatttcctttgtagtattcctgctgttggccattattcttgtggcgctt
attttgagatttaggaggaaatatgtcaaagtgaaaacaagaactgtagattcaatggct
acaagtttaaaccacagtatttcggatacacttgaaaaaagtaatggccataggcacagc
accattgtccttcaagatttagcagagcaggtggacatcagagacaagaaggaggtgact
aacccctgtaggcactctggctcaagtggcaggggctctgcagatggagatgcagccgaa
gacgaagagatcaagatgatcaatgaacatccctgccggaaaggttctgggtctgcccta
aacgagagggcatccagggtgccagactcagggatacctcaggactcagaccaattctct
tgccagtcagaggaagcagatctggctgttaccaccactgccactgttgccaacagctca
gagagcatttaccacttcaaagaggaaggtggaggggaaggatgtgaccaaaactatgcc
tcaaatgaagtactgtctagaaggatcactggcatggccatcaaagagaaagacgtgttg
gcgcacagtacaaagagatatatcttcaacactgatggccagagctccgcaagggcttcc
cttacttcgttagtgagtgcagaagaggaactcagaggaagctataactgggactactta
atgaactgggagcccagatttcagccactggcctctgtctttacagacattgccgagctc
caggataatgggttacaaaagccaaatattgcaaaagagtccaggggtattatttatccc
cctcccttaatcacgtcagtggctcagcctggaatcagggcggttccaccgcggttgccc
acctttaccaacagagcagccttccctaaatacactcaatctcccctcactgggaagtca
ggtctcacaccgtccgccatgacacccagcttctctccatctctgtccctgcttaccatg
caaactcccacatcgtccccagttgtttcagagacaggcatcactggcccatccaaaaga
gcaacccttcatccttcaacacccagagaagaagacatgcaagtgtaa
DBGET
integrated database retrieval system
