KEGG   Polyodon spathula (Mississippi paddlefish): 121323071
Entry
121323071         CDS       T07273                                 
Name
(RefSeq) collagen alpha-1(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510  Focal adhesion
pspa04512  ECM-receptor interaction
pspa04518  Integrin signaling
pspa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121323071
   04518 Integrin signaling
    121323071
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121323071
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121323071
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pspa04147]
    121323071
   00536 Glycosaminoglycan binding proteins [BR:pspa00536]
    121323071
Exosome [BR:pspa04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   121323071
Glycosaminoglycan binding proteins [BR:pspa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121323071
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   121323071
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 DUF1194 vWA-TerF-like Piwi
Other DBs
NCBI-GeneID: 121323071
NCBI-ProteinID: XP_041119734
LinkDB
Position
11:22208992..22258161
AA seq 1005 aa
MKLKAIALTFLQLCLTWTGSQSQTPTKALYYKDCPVDLFFVLDTSESVALRVKPFGSYVD
EVKDFTVSFIEQLKASYYRCDRSLKWNAGALHYSDEVKMIKELSSLPDQKADLNKRVRDV
QYIGKGTYTDCAIKRGTEELLIGGSHRRENKYMIVVTDGYPLEGYKEPCGGLEDAANEAK
HHGIKVFAVAISPSHLETRLNVIATDNSYRQNFTATGNIQQQKADTIRNIIDIIVKESEQ
VPPRGPAGEDGTLGFEGESGRPGLPGGKGEAGDPGRLGDIGPIGYQGMKGDKGARGEKGD
RGNKGYKGEKGQHGIDGIDGKKGEPGFPGLSGCKGSPGLDGLPGVSGPKGDPGPYGIKGS
RGEKGRDGERGRPGNSGKLGVKGMPGERGVNGDKGERGDEGEPGPDGPRGEKGSLGERGA
PGTPGARGPRGDLGEPGPPGEPGREGSIGLNGDPGEAGPPGSKGYKGDEGPPGPEGVKGP
KGMKGMPGDPGLMGERGEDGAPGNGTEGFPGFQGYPGARGDPGTNGTKGYPGPKGDDGEP
GDPGADNDVSGPPGPKGAKGHRGREGPGGPVGPPGPPGADECEILDIIMRMCSCCECKCG
PLDLMFVLDSSESIGMQNFQLSKDFIIKVIDRLSRDERVKFDENESRVGVVQYSHKQTEE
LVAMGSADIKSIQDLKEAVKNLKWIAGGTFTGSALGFSRTNLLDRFRLENRFALVLTDGR
SDTLRDPTPLNELCAVNTQVVAVGVGDIFKKQPNTEQLGEIVCSSGIILRRDNYAELLED
SFLQNLTAHLCQEKKCPDYTCPISFTSSADITILMDSSTSVGHHNFETKKQFVKRLAERF
LMAKKPSQATVRVSVVQYSGSQQQSVEVPFSQNYTELASGIEQIQFLNDATDVTAALDYV
ISQYRGARANTNKKVLIFSDGRSQGISDEVIQKSVAEARAAGIEIYVLAVGSQVNEANLR
LLVSDRKGVYNVAYGARHLFRVSDYHSLLRGVFYQTVSRKISLIS
NT seq 3018 nt   +upstreamnt  +downstreamnt
atgaagctcaaagcaattgctctaacttttttacaactctgtttaacatggacaggatcg
caatcgcagacgccaactaaagctctgtactataaagactgccctgtggatctgtttttt
gtcctggacacctcggagagtgtggctctgcgggtgaaaccttttggctcctacgtggac
gaggtgaaggacttcactgtctcgttcattgagcagcttaaagccagctattaccgctgc
gatcgcagtctgaagtggaatgcaggcgccttgcactacagtgatgaagtcaagatgatc
aaagagctgagctcactgccggaccagaaagcagacctgaacaagagagtgagagatgtg
cagtacattggcaagggcacctacaccgactgcgccatcaagaggggcacagaggaactg
ctgatcggtggttcccatcgccgggagaacaagtacatgatcgtagtaactgacgggtac
cctctggagggttacaaagagccctgtggaggcctggaagatgctgccaatgaagccaaa
caccacggcatcaaggtcttcgctgtcgccatctctcccagtcacttggaaaccaggctg
aatgtaattgcaactgacaacagctacagacagaatttcactgcgactgggaatatccag
caacagaaagctgacaccatccgcaacattatcgacatcatcgtcaaagaatcagagcaa
gtgccaccaagaggtccagcaggagaagatgggacattaggatttgagggtgaatcagga
agaccgggccttcccggggggaagggagaagcaggagaccctggaagactgggtgacatt
ggacctattggttaccaaggcatgaagggtgacaaaggagcaagaggtgaaaagggggat
agaggcaacaaaggttacaagggtgaaaagggacagcacggaattgatggaatcgatggt
aaaaagggtgaacctgggtttcctggactttctggctgcaaaggatccccaggacttgat
ggtttgccgggagtttcaggacccaagggagaccctgggccctatggtatcaaaggaagc
aggggtgagaaagggcgtgatggagaaagaggaaggccaggaaacagcggcaaactcgga
gtcaaggggatgccgggggagagaggagtgaacggagacaaaggagaaagaggtgatgag
ggtgagccaggcccagatggacccagaggtgaaaagggcagtctaggagaaagaggagca
ccgggaacaccaggagcaagagggcctcgaggagacttgggcgagcccggaccaccaggg
gaacctggacgagaagggtccatcggactgaatggagatccgggtgaagctggacctcca
ggatcaaaagggtacaagggagatgaaggacctcctggacccgagggggttaaaggacca
aaaggaatgaaagggatgcctggagatcctggtctgatgggtgagaggggggaagatggg
gctccaggaaacggaactgaaggattccccggcttccaaggttacccaggtgcaagaggc
gatccaggcactaatggcaccaaaggatacccaggaccaaagggagatgatggggagcct
ggggaccccggtgctgacaatgatgtttctgggcctcctggaccaaagggtgccaaggga
cacagagggagggaaggacctggcggaccagttggacctccaggaccgccaggcgctgat
gagtgtgaaatcttggatataatcatgcggatgtgttcatgctgtgaatgtaagtgtggt
cccctggacctcatgtttgtactggacagttcagagagtatcggcatgcagaactttcag
ctgtccaaagacttcataatcaaagtgattgaccgactaagcagagacgagcgagtcaag
tttgatgaaaatgagtcccgtgtcggagtggttcagtacagccacaagcagacagaggaa
cttgttgccatgggtagcgcagacatcaagtccatccaagatttgaaagaggctgtgaag
aatctgaagtggattgctgggggaaccttcactgggtcagcacttggcttctccaggacc
aatcttctggatcggttcaggctggagaatcgattcgccctggttctgacagacggacgc
tcagacacattgcgggaccccacccctttgaatgagttgtgtgcggtcaacacccaggtg
gttgccgttggtgttggggacattttcaagaagcaacccaacacggagcagcttggagag
atcgtttgctcgagtgggatcatcctacgtagggacaactacgcagagctgctggaggac
tccttcctgcagaacttaacagcacacctctgccaagaaaagaagtgtccagactacacg
tgtccaatctccttcacgtcttcagctgacatcaccatcctgatggacagctctaccagc
gtcggacaccacaacttcgaaaccaagaagcagtttgtgaagcggctggccgagcgcttc
ctcatggcaaagaagccctcccaggcgacggtgcgtgtgtcggtggtgcagtacagtggc
agccagcagcagagtgtggaggtgcccttctcccagaactacacagagctggcctctggg
attgaacagatccagttcctcaacgatgccacggatgtgacagcagcgctggactacgtg
atctcgcagtaccggggtgctagggccaacaccaataagaaggtcctgatcttctctgac
gggcgctcgcagggcatctccgatgaggtgatccagaagagcgtggcagaggctagggcg
gcaggcatcgagatctacgtgctagccgtgggcagccaggtgaacgaggccaacctgcgt
cttttggtctcagataggaagggcgtctacaatgtggcctacggggcgcgccacctgttt
agagtgtccgactaccactctctgttgagaggggtcttctatcaaacagtatccagaaaa
atctctttgatcagctga

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