Polyodon spathula (Mississippi paddlefish): 121323132
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Entry
121323132 CDS
T07273
Symbol
nhej1
Name
(RefSeq) non-homologous end-joining factor 1 isoform X1
KO
K10980
non-homologous end-joining factor 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121323132 (nhej1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121323132 (nhej1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121323132 (nhej1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
XLF
XLF_CC
XRCC4
Motif
Other DBs
NCBI-GeneID:
121323132
NCBI-ProteinID:
XP_041119872
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All DBs
Position
11:complement(25477223..25576558)
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AA seq
332 aa
AA seq
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MEVFGDSVEAPLDQPWVPLDIADTPFLAKVHFGDTAYQLLLSDLHSVWHEEADAKTIGER
SQELNRRLKAPVSSFFRQLCVVARPKLEVGVSEDSKAVFSYERTPERLSLRVKSELAGVP
FYWEFRCTPATVTIVCRHLVHPLLTMCQVLQRQTQDLMGLLGRKDAEIQDYQENGATLSR
GGAGDCSRAHTQLIPSLLLSGRLETAVFREQDFKKLFLSERLPEVCAVQACRGFSREIQE
LYTAVTTLGCHRKRKHPGGESASVVPNQELNCPSPAVVEGKQEREVISFAVTKARQEEDT
VPPTLEAASPCPVPPERPSTRPKKKKAKGLFR
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtttggggattcagttgaggctcctctggaccagccctgggttcctttagat
atcgcagacacccccttcctggccaaggtccacttcggggacacggcctaccagctgctg
ctctcggacctgcactctgtgtggcacgaggaggctgacgccaagaccattggggagcgg
tcccaggagctgaacagacgcctgaaagctccggtgtcgtccttctttcgtcagctgtgt
gtcgtggctcgtccaaagctagaggtgggagtgagcgaggactccaaggccgtgttctcc
tacgagcgcaccccggagcggctgtctctgcgtgtgaagagcgagctggctggagtaccc
ttctactgggagttccgctgcacccccgccaccgtcacaatagtgtgtcggcacctagtg
caccctcttctgacgatgtgccaggtactgcagcggcagacccaggatctgatgggcttg
ctggggaggaaggatgctgagattcaggattaccaggagaacggggccacgctaagtcga
ggtggggctggagattgttcgcgcgcacacacacagctgatcccatcactactcctttca
ggtcgtttggaaacggctgtgttcagggagcaggacttcaagaagctgtttctgtctgag
agactgcctgaggtgtgtgctgtgcaggcctgcagaggattcagcagagagatccaggag
ctgtacacagcagtaacaacgctcgggtgtcaccgcaagcgcaagcacccaggaggggag
agtgcaagcgtcgttcccaaccaggaactgaattgcccctctccagccgtcgtagaagga
aaacaggaaagggaagtgatctcttttgctgtaaccaaggccagacaggaggaagatacc
gtgccgcccacccttgaagcagcatctccgtgccccgttccccctgagcgcccctccacc
agacccaagaagaaaaaagccaaggggctgttccgctga
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