Polyodon spathula (Mississippi paddlefish): 121323167
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Entry
121323167 CDS
T07273
Name
(RefSeq) CPD photolyase isoform X1
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121323167
Enzymes [BR:
pspa01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
121323167
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
121323167
Prokaryotic type
121323167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
121323167
NCBI-ProteinID:
XP_041119979
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All DBs
Position
11:27861657..27867811
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AA seq
579 aa
AA seq
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MEEKPGKLRKTKNDNGNTGAGRVLDTVKIDQKVVEGGRQAGSSSGREAKAARKQEPGKRE
SAGETTRSGSSGDELSNTGTRKKRRLGARDVVASPPGGVGGLASSIKETRLQARMSVQGF
EFNKKRVRLISEAVEMKDGSESIVYWMSRDQRVQDNWALLYSQHLALSHELPLHVCFCLV
PRFLDATIRHFGFMLRGLEEVAKECAELNISFHLLTGYAKDVLPEFVRMQGAGGVVTDFS
PLRVPLQWLQDVKERLPRDVMLVQVDAHNIVPCWVASEKQEYGARTIRKKIHDKLSEYLT
EFPPVLRHPHGAGCEAKAVDWEQARSSLEVDCSVKEVDWARPGTEAGLAMLESFIMERLK
LFGSDRNNPNRPALSNLSPWFHFGQVSVQRAVLEVRKCSSKYLQSVNSFIEEAVVRRELA
DNFCYYNKNYDCVEGASDWARKTLQDHAQDERSHLYSRAQLEAGKTHDPLWNAAQLQMTL
EGKMHGFLRMYWAKKILEWTSSPEEALETALYLNDRYELDGRDPNGYVGCMWSICGIHDQ
GWGERPVFGKIRFMNYAGCKRKFDVGQFERKYHPEKFTV
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaaccaggcaagctgaggaaaaccaagaatgacaatgggaacaccggggct
ggcagagtcttggacacagtaaagatagaccaaaaggtagtggagggaggcaggcaggct
gggtctagcagcggcagagaagcgaaagcagcaaggaagcaggaaccagggaagagggag
agtgctggggagacgacacggtcgggatcgagtggagatgagctttccaacacaggaacc
aggaagaaacggagactgggtgctcgggacgttgtcgcgtcaccaccggggggagtggga
gggctggcgagctcaataaaagagactagactgcaggcaaggatgtcagtgcagggattc
gagttcaacaagaagcgagtgcgcctcatctccgaggctgtggagatgaaggacggctcg
gaaagcattgtgtactggatgtcccgggaccagagggtgcaagataactgggctctcctg
tactctcagcacctggccctgagtcatgagctcccgctccatgtgtgcttctgcctggtg
ccacgcttcctcgatgccaccatccgacacttcggcttcatgctgcggggcctggaggag
gtggccaaggagtgtgcagagctgaacatctctttccacctgctgacaggctatgcgaag
gatgtgctgccggagtttgtgcggatgcagggggcggggggtgtggtcacagacttctcc
ccgctgcgggtacccctgcagtggctccaggatgtgaaggagaggctgccgcgtgatgtc
atgttagtgcaggtagatgctcacaacattgttccctgctgggtcgcgtcagaaaaacag
gaatacggagccagaactatccgcaagaagatccatgacaagctttccgaatacttgaca
gagtttcctccggtgctccgacaccctcacggcgccgggtgcgaagcgaaggcagtggac
tgggaacaggcccgctccagcctggaagtagactgtagtgttaaggaggtagactgggct
cgacccgggacagaggcgggcctagcgatgctggagtccttcatcatggagcgcctgaaa
ttgtttgggtctgaccgcaacaacccaaaccgacccgcgctcagcaacctgtctccctgg
ttccacttcgggcaggtctccgtgcagcgtgccgtgctggaggtgcggaagtgcagctcg
aagtatttgcagtctgtcaacagcttcatcgaggaggcggtggtgcgtcgagagctggcc
gacaacttctgttactacaacaaaaactacgactgcgtagagggtgcctctgactgggcc
aggaagactctgcaggaccacgcgcaggacgagcgctctcacctgtactcccgggctcag
ctagaggcgggaaagacacacgacccgctgtggaatgcagctcagctccagatgactctt
gaggggaagatgcatggcttcctgcggatgtactgggcgaagaagatcctggagtggacc
agcagcccggaggaggcactggagacggcgctctacctcaacgaccgctacgagctggac
ggacgagaccccaacggatacgtcggctgcatgtggtccatctgtgggatccatgaccag
ggctggggggagagacctgtcttcgggaagatccgcttcatgaactatgcggggtgcaag
aggaagtttgacgtggggcagttcgagcgcaagtaccaccccgagaaattcactgtctga
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