Polyodon spathula (Mississippi paddlefish): 121323197
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Entry
121323197 CDS
T07273
Name
(RefSeq) transcription factor Sox-2-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121323197
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121323197
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121323197
NCBI-ProteinID:
XP_041120027
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Position
11:36567085..36568364
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AA seq
315 aa
AA seq
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MYSMMETELKPPAPQTHSGGTGNSNSSANNQKNSPDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLAPGGNAMNSGVGVGAGMGAGVNQRMDTYAHMNGWANGGYGMMQEQLGYPQH
PGLNAHSAAQMQPMHRYDMSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPAMTLGSMGAV
VKSESSSSPPVVTSSSHSRAPQCQPGDLRDMISMYLPGAEVPESTAQSRLHMSQHYQSAP
VPGTTINGTLPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatggaaaccgagctcaaaccccctgcccctcagacacattctgggggc
acggggaactcaaactcttctgcaaacaaccagaaaaacagtccggaccgagtgaagaga
cccatgaacgcgtttatggtgtggtcgagagggcaaaggagaaaaatggcgcaggagaac
ccgaaaatgcacaattcagaaatcagcaaaagactcggtgccgagtggaaacttttatcc
gagtctgagaagcgaccttttatcgacgaagccaagcgtctcagagctctccacatgaag
gaacacccggattacaaatacagaccgaggcggaaaaccaagactctgatgaaaaaggac
aagtacactctgccaggtggacttctcgctccgggcggcaatgcgatgaacagcggggta
ggtgtaggggctggcatgggtgccggggtcaatcagaggatggacacttatgcacatatg
aatggctgggccaacggaggctatggtatgatgcaggagcagctgggctacccgcagcac
ccaggtttaaatgctcacagcgctgcacagatgcagcccatgcaccgctatgatatgagc
gcccttcagtacaattctatgaccagttcacagacctacatgaacgggtcccctacctac
agcatgtcatactcccagcagggcacccctgcaatgactctgggctccatgggtgcggtg
gtcaagtcagaatccagctcaagtccaccggttgtcacgtcatcttctcattcgagggct
ccccagtgccagcccggggaccttcgggacatgatcagcatgtatctgcctggagctgaa
gtaccagaatcaactgcccaaagcagacttcacatgtcacaacattaccagagcgcacct
gtacccggtacaaccattaatggcacactccctctatcacatatgtaa
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