Polyodon spathula (Mississippi paddlefish): 121323216
Help
Entry
121323216 CDS
T07273
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121323216
09122 Translation
03013 Nucleocytoplasmic transport
121323216
03015 mRNA surveillance pathway
121323216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121323216
03041 Spliceosome [BR:
pspa03041
]
121323216
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
121323216
Spliceosome [BR:
pspa03041
]
Common components
Common spliceosomal components
Cap binding complex
121323216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
AAA_11
Vfa1
DUF7197
Barstar
Importin_rep_6
Afi1
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
121323216
NCBI-ProteinID:
XP_041120064
LinkDB
All DBs
Position
1:complement(82344161..82367377)
Genome browser
AA seq
798 aa
AA seq
DB search
MSRRRHSDENDGGQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCTVARLLPEKLTVYSTLVGLLNARNYNFGGEFVESMIRQLKETLKSNL
YNEALYLVRFLSDLVNCHVIAAPSMVAMFENFVSIVQEEDGPQVRCDWYVYAVLSSLPWV
GKELYEKKDVEMERILNQIESYLKRRQKIHVPMLQVWTAEKPHPQEEYLDCLFAQVQKMK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPPHSEDAVYPMPKVVFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKSHWRERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPQPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYTRLDTMNTTCIDRYVSWFPQT
VFPFMNFQFRWSWDDWSDCLTQDLDKPKPKFVREVLEKSMRLSYHQRIVDIVPANFSVLI
PANPIFIYKYMDESSSSMPGYPVTVAISNAIINRSSNDEILTILKDVPNPNQEDDDDEGN
SFSPLKIDVFLQTLLHMAAKSFSHSFSALAKFHEVLKILTDSDEGKLHILRVVYEAWRNH
PQMISVLIDKMIRTQIVDCAAVANWIFSPDMAHDFTRFYVWEILHSTIRKMNKHVQKIQK
ELETAKEKLEKQHSRRKDSGDEEEEDKNSDEEDGLLEEQIERLQEKVESAQSEQKNLFLV
IFQRFIMMLTEHLVRCETGGVDFNTPWYKNCIERLQQIFLMHHQTIQQYMVTLENLLFTA
ELDHHILTVYRQFCALHM
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgtccagacggagacacagtgatgagaatgatggaggacagcctcacaaaaggagaaga
acatcagaacccattgaaattgaagatcgattggaatccttgatatgcagagttggggaa
aagagcacttcgtctttggaaagcaatttggaaggcctggctggggttttggaggctgac
cttccgaattacaagaataaaatcctccggatcctgtgtactgtggcccggctgttacca
gagaagctcactgtgtattcaacgctggtggggctgctgaatgctaggaactataacttt
ggaggggagtttgtggagtccatgattcgacagctaaaagagaccttgaaatcaaacttg
tataatgaagctttgtatcttgttcgcttcctaagtgatctagttaattgccatgtgatt
gctgctccatcaatggtggcaatgtttgaaaactttgtcagtattgttcaagaggaggat
gggccacaggtgcgctgtgactggtatgtgtatgcagtgctgtcctctctgccctgggtg
gggaaggagctctacgagaagaaggatgtagaaatggaacggattctaaaccagatcgaa
agttatctgaagaggcgtcaaaaaatacatgtgccaatgttgcaggtctggactgctgaa
aaaccacatccacaggaggagtacctggactgcctgtttgcacaggtacagaagatgaaa
aaggatcgctggcaggagaggcacatccttagaccatacatcgccttcgacagtgttctg
tgtgaggcgctgcaacacaacctgcccccgtttactccacctccccactccgaggacgct
gtctatccaatgcccaaggtcgtcttcaggatgtttgactatacagatgcgccagagggc
cctgtcatgcctggcagccactcggttgagaggtttgtaatagaggagaaccttcattgc
atcatcaagtctcactggagggaaaggaaaacttgtgctgctcagcttcttagctaccct
gggaaaaacaagattccgctcaattaccacatcgtggaggtgatttttggagaattgttc
cagctgccacagcctccacacattgatgtcatgtacaccacgctgctgattgagctctgc
aaactgcagcctggctctttgccacaagttctcgcacaagctactgagatgatgtacacg
cgtctggatacaatgaacaccacttgtatagacaggtatgtttcctggtttcctcaaact
gttttcccattcatgaacttccagtttcgatggagttgggatgactggtctgactgcttg
actcaggaccttgataaacccaaaccaaagtttgtaagagaggtgttggagaaatccatg
aggctttcttatcatcaaaggattgtggacattgtaccggctaacttttcagtgttgata
ccagcaaaccccattttcatatataaatatatggacgaaagtagcagttccatgcctggc
tacccagtgacggtcgccatcagcaatgcaattataaaccgatcctcgaacgacgagatc
ctgacaatcctgaaagatgttcccaaccccaaccaggaggatgatgacgatgaaggcaac
agtttcagtcctctgaagattgatgtgttcctgcagaccctgcttcacatggctgcaaag
tcttttagccactccttcagtgctctggccaaatttcacgaggtgttgaaaatcttgact
gacagtgatgaagggaagctgcatatccttcgggtggtgtatgaagcctggagaaatcat
cctcagatgatatctgtgctgattgacaagatgattagaacacagattgttgactgtgca
gcagtggcaaactggatcttctctccagacatggcccacgatttcaccaggttttatgtt
tgggaaatcctgcattccactattcgtaaaatgaacaaacatgtgcagaagatacagaaa
gagcttgagactgccaaggagaaactggaaaaacaacacagcagaaggaaggacagtggt
gatgaggaggaggaggacaagaacagtgatgaagaggatgggctgttggaagaacaaatt
gaacgtctgcaggagaaagtagagtctgctcagagtgaacagaaaaaccttttcctggtc
atcttccagcgcttcatcatgatgctcacagagcacttggtgcgttgtgaaactggaggg
gttgacttcaacacaccctggtacaagaactgcattgagaggctgcagcagatcttccta
atgcatcaccagactatccagcagtacatggtcacattggagaacctgctcttcacagct
gagcttgaccaccacatcctaactgtctaccggcagttctgcgctctgcacatgtaa
DBGET
integrated database retrieval system
