Polyodon spathula (Mississippi paddlefish): 121323221
Help
Entry
121323221 CDS
T07273
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04136
Autophagy - other
pspa04140
Autophagy - animal
pspa04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
121323221 (atg4b)
04140 Autophagy - animal
121323221 (atg4b)
04136 Autophagy - other
121323221 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121323221 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121323221 (atg4b)
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121323221 (atg4b)
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
121323221 (atg4b)
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
121323221 (atg4b)
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121323221 (atg4b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
121323221
NCBI-ProteinID:
XP_041120073
LinkDB
All DBs
Position
11:complement(42358564..42377479)
Genome browser
AA seq
394 aa
AA seq
DB search
MDAATLTYDTLRFAELEEFPQTEEPVWILGRESSALTEKDDILCDISSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALVLRHLGRDWRWVKGKRQREEYYSILNAFIDKKD
SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLSVFDSWSRLAVHVAMDNTVVIEEIR
RLCMPWLDYAGAAAFMDPDLEREHNGFTEGACALDQSAVWKPLVLLIPLRLGLSEINEAY
IETLKKCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPSVEPCDDGLVPDDSY
HCEHPPCRMHIRELDPSIAVGFFCSTEEDFDDWCLRIQKMSERREALPMFELVDRQPSHF
MSSDILNLTSDFSDSDRLERFFDSEDEEFEILSL
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagctaccctcacctacgacacattgaggtttgcagagttggaggagttccca
cagaccgaggaacctgtgtggattctgggacgggagtccagcgctctcacagagaaggat
gacattctgtgtgatatttcatctcgcctctggttcacttacagaaagaattttccacct
atcggagggacaggccccacctctgatactggctggggttgcatgctgcgatgtgggcag
atgatcctgggagaagccctggtcttaaggcatctgggccgagactggaggtgggtgaaa
ggaaagaggcagagagaggagtattacagcattcttaatgccttcattgacaagaaggac
agctactactctatacaccagatagctcagatgggagtaggggaggggaaatccatcgga
cagtggtatggaccaaacacagttgcacaggtgctaaagaaactttcagtgtttgactcc
tggagccgtcttgctgttcatgtagccatggacaacacagtggtcattgaggagatcagg
aggctgtgcatgccatggctggactatgccggagctgctgccttcatggaccccgacctg
gagcgggagcacaatggcttcacagagggagcctgtgcgctggaccagtctgcagtgtgg
aaaccgctggtgctgctgatcccactgcggctggggctgagcgaaatcaacgaggcctac
atcgaaacactcaagaagtgcttcatgctgccccagtcactaggagtgattggggggaaa
cccaacagtgcccactatttcatcggctatgtaggagaggagctgatctatctggacccc
cacaccacgcagccctctgtggagccctgcgatgatgggctggttcctgatgacagctac
cactgcgagcacccgccctgccgcatgcacatccgtgagctcgacccctccatcgctgtg
ggtttcttctgtagtacggaggaggattttgatgactggtgtttgcgcattcaaaagatg
tctgagagaagagaagcattgccaatgtttgagctggtggacagacagccttctcacttc
atgagctcagacatacttaacctcacctcagatttctctgactctgatcgactggagagg
ttctttgactcggaggacgaggagtttgagatcctgtctctttga
DBGET
integrated database retrieval system
