Polyodon spathula (Mississippi paddlefish): 121323251
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Entry
121323251 CDS
T07273
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03020
RNA polymerase
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121323251
09124 Replication and repair
03420 Nucleotide excision repair
121323251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121323251
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121323251
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121323251
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121323251
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121323251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
121323251
NCBI-ProteinID:
XP_041120135
LinkDB
All DBs
Position
1:complement(82471065..82493468)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHATGEIEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLLTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagacgaagatattcagtatgatgaagatgaggatgaaatcacaccagat
ttgtggcaggaagcctgttggattgttattagctcatactttgatgaaaagggcttggta
cgacagcagttggattcatttgatgaatttattcagatgtccgtgcagagaatagtcgaa
gatgcccctccaattgacttacaagctgaagctcaacacgccactggggagattgaagaa
ccgcctcgttatttgctgaagtttgaacagatttatctgtctaaaccaacacattgggag
agagatggtgctccttcgcctatgatgccaaatgaagccaggctgcgaaatcttacgtac
tcggcgcctctttatgtggacattacaaaaaccataattaaggagggagaggaccagctg
ctgacacagcaccagaaaaccttcattggaaagattccaatcatgcttcgctccacatac
tgcttgttgagtggcctgacagatcgtgatctttgtgagttgaatgagtgtcccctggat
cctggtggatattttattatcaatggatcagaaaaggttctgattgcccaggagaagatg
gccacgaacacagtttatgtgtttgcaaagaaagattctaagtatgcttacacaggcgaa
tgtcgatcctgtttggaaaactcttctcgcccaacaagttcaatatgggtcagcatgatg
gcaagaggtggacagggagtaaagaaaagtgcaattggtcagagaatcgtatccacgttg
ccatatattaggcaagaagtccccatcatcattgtgtttcgtgctctgggttttgtgtct
gacagagacatcttggagcacattatttatgattttgatgatccagaaatgatggaaatg
gtcaaaccgtcgctagatgaagcttttgttattcaggaacagaacgtggctctgaatttc
atcgggtcaagaggtgcaaaacctggagtaacgaaagagaagagaattaagtatgccaag
gaggtcttgcagaaagaagtgctgccacacgtgggtgtcagtgacttctgtgaaacaaag
aaggcctatttcttggggtacatggttcataggcttcttctggctgctttaggtagacga
gagctggatgacagagatcactatggaaacaaaagactagatctagctggacccttactt
gcttttctatttagaggaatgtttaagaacctgttgaaagaaatcagaatttatgcacag
aaattcatagaccgagggaaagatttcaatttggagttggctatcaaaactcgaataatc
tcggatggattgaagtattctctggctacaggaaattggggcgatgtgaagaaggcccat
caagctagagctggagtgtctcaggtgttgaatcgtctgacttttgcttcaactttgtct
catctgaggcgtctgaactctccaattggtagagatgggaaactggctaaacccaggcag
ctgcacaatacactgtggggaatgatttgtcctgctgagactccagagggtcacgctgta
gggcttgtaaagaacctggctctcatggcctacatctctgtgggctctcagccttcccca
atcttggagttcttggaggagtggagtatggaaaacctggaggagatttcacctgctgca
attgctgatgctaccaagatttttgtcaatggctgctgggtgggaatccacaaggatcct
gagcagctgatgaacacactgagaaaactgcgtcgccaaatggacatcatagtgtctgag
gtctctatgatccgagatatcagagagcgtgagatccgtatttacacggatgctggaagg
atctgtagaccgcttctgattgtggagaaacagaagctgctgctgaagaggcgacatatc
gaccagctgaaagagagagagtacaataattacagttggcaggatctcgtggcgagtggt
gttgttgagtatatagataccctggaagaggagactgtgatgcttgcaatgactccggat
gacttgcaggagaagggagttgcctattgctcaacttacacccactgtgagattcatccg
tccatgatccttggagtctgcgcctccattatccctttcccagatcataaccagtcccca
agaaacacataccagtctgctatgggtaagcaagccatgggtgtttatattacaaacttc
catgtgcgtatggacaccctggcacatgtgctgtattacccgcagaaacccttggtgacg
acacgttctatggagtacctgcgattcagagaacttccagcaggcatcaactcgatagtg
gcaattgcatcatacacaggatacaatcaagaagattctgttattatgaatcgttctgct
gttgacagaggcttcttcaggtctgtattctaccgttcttacaaagaacaggaatcaaag
aaaggttttgaccaagaggaaatttttgaaaaaccaacacgcgaaacctgtcaaggtatg
aggcatgccatatatgacaagctggatgatgatgggttgatagcacctggagttcgtgtc
tctggggaggacgttattatcggtaaaactgtgactctgcctgagaatgacgacgagctt
gaaagcacaaacaggagatacacaaagcgagactgtagcactttcctccgcaccagtgaa
actggtattgtggatcaagtaatggtgacgctcaatcaggaagggtacaagttctgcaaa
attagggtgcgttcagtaagaattccacagattggagacaagtttgccagtagacatgga
caaaagggtacttgtggtatccagtatagacaagaggacatgccctttacctgtgaaggt
ataacacctgatatcatcatcaaccctcacgccatcccctctcgaatgaccgttggacat
ttgattgaatgtcttcagggaaaggtgtcagcaaacaagggggagattggcgacgccaca
cctttcaatgatgctgtgaacgtgcaaaagatttccaatctgttatctgaatatggttat
catctgagaggaaatgaggtgttatacaatggctttacaggtcgcaaactgacttcccag
atttttattggtcccacatactaccagcggttaaagcacatggtggatgacaagattcac
tcgcgtgctcgtggacctgttcagatcctgaacaggcagcccatggagggtagatcacgt
gatggaggtctgcgttttggtgaaatggaacgagattgccagattgctcacggagctgcg
cagttcttgagggaaaggctgtttgaagcttctgatccataccaagtccatgtgtgtaac
ctctgtggactgatggcaattgcaaatacaaggacgcacacatacgagtgtcgtggatgt
agaaataaaacacagatttcattggttcgaatgccatatgcctgcaaacttctcttccag
gagttgatgtccatgagtattgctcctcgtatgatgtctagttaa
DBGET
integrated database retrieval system
