Polyodon spathula (Mississippi paddlefish): 121323280
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Entry
121323280 CDS
T07273
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
pspa04148
Efferocytosis
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121323280
04148 Efferocytosis
121323280
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121323280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121323280
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121323280
Hops complex
121323280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
121323280
NCBI-ProteinID:
XP_041120181
LinkDB
All DBs
Position
11:complement(5121413..5139463)
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AA seq
837 aa
AA seq
DB search
MAFVTANWNPLGEAFYRKIELYEMGWNLREGLKDCLIAAAPYGGPIALLKESQRRERSAS
ARPLLEIYSAAGVPMASFPWKSGVVVHIGWTVSDDLLCIQEDGTVLIYDMFGNFRRHFSM
GNEVLQNQVIEAKVYHSAYGTGVAIVTGEFRFTLATNIDDLKLRRLPEVPGLQVAPSCWA
VLTQDRQTKVVLASGKDLYVLDNTACTPVTPPGIDPQVSSYFQMAASFNYKYLALFTDTG
HVWMGTSNLKEKLSEFDTKIHSPPKQMVWCRRPKSQQPSVVLMWDRLLLVAGKCRESIKY
HLDEESFLVPELDGVRIVSRSFHEFLHEVPGACEEIFKIASMAPGALLLEAHKEYQKESQ
KADEYLREIKEQNLLPEAVRQCVEAAGFEHEPETQKILLRASSFGKCFLSNFPPEQFVGM
CLDLRVLNAVRDYSVGIPLTYAQYKQMTLQVLIDRLVFRRLYPLAIEICRYLKIPEFQGV
SRVLKHWACFKVQQKEEPDDVIACAINQKLGDMASISYSEIAARAYECGRTELAIKLLEF
EPRSGEQVPLLLKMKRSQLALSKAIESGDTDLVYMVVTYLKNEMNRGDFFMTLRNQPVAL
SLYRQFCKHQEQNTLKDLFNQDDDHQELGNFYVRASYREGSVEARMVALQNAVDEFNKAK
NEFSAKATEEQMKLLRWQHRFQEEFDKPYLDRSLHETVCSLLVDGKHKQAEQLYKDFRIP
DKRFWWLKISALAETQDWEELEKFSKSKKSPIGYLPFVEICVKHHNKYEAKKYVSKVTLD
QKVKAHLAVGDLEQAVEAAIDRRSESELNLVLSRCTPTTDRALLDKINRARAGALKK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgtgacggcaaactggaacccgctgggggaagcgttttacaggaagatcgag
ctgtatgagatgggatggaacctccgagaagggctgaaggactgcctcattgcagccgcc
ccgtacgggggccctatagccctgctgaaggagagtcagagacgggagcgctctgccagt
gccaggcccctgcttgagatctactcagctgctggagtgcccatggccagcttcccgtgg
aagagtggtgtggtggtgcacattggctggacagtcagtgatgacctgctgtgcattcag
gaggacggcaccgtgctgatctacgacatgttcggcaacttccgccggcacttcagcatg
ggcaatgaagtgttgcagaatcaagtgattgaagccaaggtgtaccactctgcctatgga
actggggttgccatagtgaccggagagttccgattcaccctggctaccaacattgatgac
ctaaaactgcgccgcctgccagaggtcccaggtctgcaggtggcgccgtcgtgctgggct
gtgctgacgcaggacagacaaaccaaggtagtgctggccagcgggaaagacctgtacgtg
ctggacaacacagcatgcactcctgtgacccccccagggatagacccccaggttagcagc
tactttcagatggcagcgtccttcaactacaagtacctggcactgttcacagacaccggg
catgtgtggatgggcacctccaacctcaaggagaagctcagtgaatttgacaccaaaatc
cacagccctccgaagcagatggtgtggtgtcgcagacccaagagccagcagccctccgtg
gttctgatgtgggacagactgctcttggtggctgggaagtgccgagagagcatcaagtac
cacctggatgaggaatcgttcctggtcccagagctggacggggttcgaatcgtgagccgc
agctttcatgagttcctgcatgaggtgccaggtgcctgtgaggagatcttcaagatcgct
tcgatggctccgggggctctgctgctggaggcacacaaagagtaccagaaggagagtcag
aaggcagacgagtacctgcgggaaatcaaagagcagaacctccttcctgaggcagtgagg
cagtgtgtggaggcagccggctttgagcacgagcccgagacacagaaaatcctgctcagg
gcctcatcctttgggaagtgctttctcagtaacttcccccccgagcagtttgtggggatg
tgtctggacctgcgagtcctcaatgcggtgcgtgactacagtgtggggatcccgctcacc
tacgcacaatacaaacagatgactttgcaggtgctgattgacagactggtgttccgccgg
ctctacccgctcgccatcgagatctgccgctacctaaagatccctgagtttcagggggtg
agcagggtgctgaaacactgggcctgcttcaaggtacagcagaaggaggagcctgatgat
gtcatagcttgcgccatcaaccagaagctgggcgacatggcaagcatctcgtactcagag
atcgcagcgagggcatacgagtgtggcaggactgagctggctatcaagctcttggagttt
gaaccccggtcaggagagcaggtgcctctgctgctgaagatgaagagaagccagctggcc
ctgagcaaagccatcgagagcggggacactgacctggtgtacatggtggtgacctacctg
aagaatgagatgaaccgaggggatttcttcatgactctgcggaaccagccagtcgcgctc
agcctctacagacagttctgtaagcaccaggagcagaacacgctgaaggacctcttcaac
caggacgatgatcaccaggaactgggcaacttctacgtgcgagccagctacagggagggg
agtgtcgaggctcggatggtagcgctgcagaacgccgtggacgagtttaacaaagccaag
aacgagttctctgccaaggctacggaggagcaaatgaaacttctgcggtggcagcatcgc
ttccaggaggagtttgacaagccctacctggaccgctccctccacgagactgtgtgctca
ctgctggtggacggcaagcacaagcaggcagaacagctgtacaaggacttccgcatcccg
gacaagaggttctggtggttgaagatctctgctctggccgagacgcaggactgggaggag
ctggagaagttctccaagagtaagaagtctccgatcgggtacctgccttttgtagagatc
tgtgtaaagcaccacaacaagtacgaagcgaagaaatatgtgtccaaagtgaccctggat
cagaaagtgaaggctcatctagcggtgggggatctggagcaggcagtggaggctgcgatt
gacaggaggagtgagagcgaactgaacctggtcctgtcacgctgcacccccaccaccgac
cgggccctgctggacaaaatcaaccgggcacgggccggagcactcaagaaataa
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