Polyodon spathula (Mississippi paddlefish): 121323289
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Entry
121323289 CDS
T07273
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121323289
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121323289
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
ATP-synt_B
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
121323289
NCBI-ProteinID:
XP_041120195
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Position
11:11995384..12038382
Genome browser
AA seq
1976 aa
AA seq
DB search
MAQQLIPPGPESFRLFCRESLDAIEKRIADEKAKKPKGDRRDNDDENGPKPNGDLEAGKS
LPFIYGDIPKGMDSEPLEDLDPYYMNEKTFIVLNKGKTIFRFNATPALYILSPFNPLRKV
AIKILVHSMFSMFIMLTIMTNCTFMTLSNPPDWAKNVEYTFTGIYTFESLLKILARGFCI
GKFTFLRDPWNWLDFSVILMAYLTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCIRWPSAESGSNLTFSLISIMDVN
GTVLNLTENTFNWTAYINDQTNYYFKKGHRDALLCGNGSDAGCIDGQTVLRVKTNVSQRL
SWIVRAFLSLFRLMTQDFWENLYQQTLRAAGKTYMLFFVLVIFLGSFYLVNLILAVVAMA
YDEQNQATLEEAQQKEAEFQAMLEQLKKQQEDAQAAAEAAVAAAAANGYGEYSGGCEVTE
SSSEASKLSSKSAKERRNRRKKRKQKCEDKEKGNIDTFHKSESEDSIKRRGFGFSIDGNR
LSYEKRYSSPDQSLLSIRGSLFSPRRNSQASLFSFRARRDVGSENDFADDEHSTFEDSES
RRGSLFVPHMQDRRNSNVSQTSRSSRVMLPINRKMHCNVDCNGVVSLVGGRIVPEATTTT
ETETKKKRFGSYQMSMDFLNEPNARQRALSVASILTNTMDELEESRQKCPPCWYKFANTF
LVWDCSPNWLRIKTIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPTTPEFDNVLSVGNL
VFTGIFTAEMILKICAMDPYYYFQEGWNIFDGIIVSLSLMELGLANFEGLSVLRSFRLLR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYRDCVCKIDE
NCELPRWHMFDFFHSFLIVFRVLCGEWIETMWDCMEVASQSMCLIVFMMVMVIGNLVVLN
LFLALLLSSFSADNLAATDDDREMNNLQIAVGRIQRGIDFMKNTLREFFQNTCIRNKKVL
NEIKPLGELHNIKDSSISNHTTVELIKEPDFCKDGNGTTSRIGSSVGKYIINESDYMSFI
HNPSLTVTVPIAVGESDFENLNTEEFSSESDIECSKEQLNQFSSSEGSTVNIQPLGEGEP
IEVEPEEALEPEACFTEGCVRKFQCCQVNIEKGKWKMWWNLRKTCFRIVEHNWFESFIIF
MILLSSGALAFEDIYIEQKKTIKIMLEYADKVFTYIFILEMLLKWVAYGFVKYFTNAWCW
LDFLIVDVSLISLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPS
IMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNTTDGERFPISVVYNKSECLMLNQSARWK
NVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKFDEQPDYEVNLYMYLYFVIFIIF
GSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPMNK
FQGLIFDFVAKQVFDITIMILICLNMITMMVETDDQTEEMQNNLYRVNLVFIILFTGECV
LKVVSLRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFFSPTLFRVIRLARIGRILRL
IKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKESGIDDMFNFET
FGNSMICLFQITTSAGWDGLLAPILNRGQPDCDSEIDHPGSSIKGNCGNPSVGILFFVSY
VIISFLIVINMYIAIILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFMEYGKLS
NFADALDPPLRVPKPNKIQLIAMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDALRGQM
EERFMASNPSKVSYEPITTTLRHKQEHMSAIVIQRAFRCYLFRRTVKKAFYLFKEKINAG
ENLLDKEEMVIDKFNYNSNTDKMDVMPSMASPPSYDSVTKPDKYERDKAEKDDRSK
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atggctcaacagcttataccgccaggacctgaaagcttccgcctgttttgccgtgaatct
cttgatgctattgaaaagcgcattgcagatgagaaggcaaagaaaccaaaaggggaccgt
cgtgacaatgatgatgaaaatggcccaaagccaaatggtgacttggaagctggaaaatca
ctgccatttatttatggcgacatccctaaaggaatggattcagaacccttggaggatctg
gatccatattacatgaatgaaaaaacctttatagtattgaacaaagggaagacaatcttc
cgatttaatgccacacctgccttgtacatcttaagtcctttcaatcctcttagaaaagta
gcgattaagatattggtacattcaatgttcagcatgtttatcatgttaactatcatgaca
aactgtacgtttatgaccttgagcaaccctcctgattgggcaaagaatgtagagtacacg
ttcactggaatttacacatttgaatcacttctaaaaattcttgcaaggggcttctgtata
ggtaaatttacattccttcgagacccatggaactggctggatttcagtgtaatcctcatg
gcatatttgacagagtttgtggacctgggcaatgtctcagcattgagaacattccgagtt
ctccgagcgttgaaaacaatatcagtcataccaggcctgaagacaattgtgggcgccctg
atccaatcggtgaagaagctctcggatgtaatgattttgactgtgttttgtctaagtgtt
tttgcactaatagggcttcaactatttatgggcaatttaagacaaaaatgtatacggtgg
ccatctgccgaatcgggttccaatttaactttctccttgatcagcataatggatgtaaat
ggaacagtgttaaacttaactgagaacacattcaactggacagcatacatcaatgaccaa
acaaattattacttcaaaaaaggacatagggatgctttgctgtgtggcaacggcagtgac
gcagggtgtattgacggccaaactgtcctgcgggttaaaaccaatgtgtcacaacgatta
tcttggatagtccgggctttcctatcattgtttcgattaatgactcaagacttctgggaa
aatctgtatcagcagaccctacgagcagctgggaaaacatacatgttgttctttgtgttg
gtcattttcctgggatcattttaccttgtgaacttgattctggctgtagttgccatggcc
tacgatgaacaaaaccaagcaacactcgaagaagcccaacagaaagaggcagaattccag
gcaatgcttgagcaactgaagaaacagcaagaagatgcacaggctgccgctgaagcagca
gtagcagctgcagctgccaatgggtatggtgaatacagtggaggctgcgaagtcactgag
agctcctcagaggcatcaaagctcagctccaagagtgccaaggaacggagaaacagacgc
aaaaagagaaaacagaaatgtgaggacaaagaaaaagggaacattgatacatttcacaaa
tcagaatctgaagacagcataaaaagaagaggctttggcttttctattgatggaaacagg
cttagctatgaaaagagatattcctccccagaccagtctctgctgagtattcggggctcc
ctgttttctccgcgacgcaacagccaagcaagcctgttcagctttagagcacgcagggat
gtaggctctgagaatgattttgcagatgatgaacacagcacctttgaagacagtgaaagc
agaaggggttcactctttgtgccacatatgcaggacagacgcaacagtaacgtcagccag
accagtagatcatccagagtaatgcttcccatcaacagaaagatgcactgcaacgtggat
tgcaatggagtggtttcactagtgggtggacgcattgtgccagaggccaccaccacaact
gaaacagagaccaagaagaaaagatttgggtcttatcagatgtcaatggactttttaaat
gagcctaatgcaaggcaaagagctttaagtgtggcaagtattttaacaaacactatggat
gaactcgaagaatcacgacagaaatgcccaccatgttggtacaaatttgcaaacactttc
ctcgtatgggactgcagcccgaactggcttcgaatcaagacgatagtgaatttaattgtg
atggatccttttgtagaccttgcaatcactatctgcattgttttgaacacattattcatg
gccatggagcattatccaacgaccccagagtttgacaatgtgctgtctgtgggaaatctg
gtgtttactggaattttcactgcagaaatgattttaaaaatttgtgctatggacccctac
tattattttcaagaaggctggaacatttttgatggtattattgtgagcctaagcttaatg
gagcttggtctggcaaattttgagggactgtctgtactgaggtcattcagactgctgagg
gtgtttaaattagccaagtcctggccaactttgaacatgctcatcaagatcattggcaat
tctgtgggagctcttggaaacttgactttggtgctcgccatcatcgtttttatttttgct
gtggtgggaatgcagctgttcggaaagaactacagagactgcgtttgcaaaattgatgag
aattgcgagctaccacgctggcacatgtttgatttctttcattccttcttgattgtgttc
cgagtcctgtgtggagagtggattgagaccatgtgggactgcatggaagtagctagtcag
agcatgtgcctgattgtgttcatgatggttatggtgattgggaaccttgtggtgttgaat
ttgttcctggctttgcttctgagctcatttagtgcagacaatcttgctgctacagacgat
gatagagaaatgaacaatctacagattgctgtgggaaggattcagagaggcattgacttc
atgaaaaacaccctcagagaattctttcaaaacacctgcataagaaacaagaaggtgctt
aatgaaatcaaaccccttggagagctgcacaacataaaagacagcagcatttccaatcac
acaacagtcgagttaataaaggagccagatttctgtaaggacggcaatgggacaaccagt
agaataggcagcagtgtgggaaagtacataatcaatgaaagtgattacatgtccttcatc
cataatcctagcctcacggtgacagtgccaattgcagtgggagagtccgactttgagaac
ctcaacacagaggaattcagcagtgaatcagacattgaatgcagcaaagagcaactaaat
cagttcagctcctctgagggaagtactgtcaacatccaaccacttggagaaggagagccg
atagaagtggaacctgaggaagccctggagcctgaagcctgtttcaccgaaggatgtgta
cggaagttccagtgctgtcaggtgaacatagagaaaggcaaatggaaaatgtggtggaac
ctgagaaaaacgtgtttccggattgtcgaacacaactggtttgaaagtttcatcatcttt
atgatccttctcagcagtggtgcattggcctttgaagatatttacattgagcagaagaag
accatcaagatcatgctggaatatgctgataaagtctttacctacatcttcattttggaa
atgcttctgaagtgggtggcctatgggtttgtgaagtattttaccaatgcctggtgctgg
ctggacttcctgattgttgatgtgtctttaatcagcttaacagccaatgccttgggctac
tcggaactgggtgccattaagtctcttaggacgctacgagcattgagacctttaagggcc
ctgtcacggtttgaagggatgagggtggtcgtcaatgctcttcttggagcaattccatcc
atcatgaatgtgctcctggtctgtcttatattctggctcattttcagtataatgggtgtg
aatttgtttgctgggaagtactatcactgtgttaacaccacggatggagagcgcttcccg
attagtgttgtttacaacaagagcgaatgcctaatgctcaaccagagtgcccgctggaag
aacgtgaaaatcaactttgacaacgtgggggccggttacctggctctactgcaagtggcc
acattcaaaggatggatggacattatgtatgcagctgtggattcacgtaaattcgacgaa
cagcctgattacgaagttaatctgtatatgtacctgtacttcgttatatttataatcttt
ggatccttcttcacattaaaccttttcattggtgtcatcatcgacaacttcaatcaacag
aagaaaaagtttgggggtcaggatatcttcatgacagaggaacagaaaaaatactacaat
gccatgaagaagcttggatcaaagaaaccacaaaagccaattcctagaccaatgaacaag
ttccaaggactcatctttgattttgttgcaaaacaagtcttcgatattaccattatgatt
ctcatctgccttaacatgattaccatgatggtggaaacagatgaccagactgaagaaatg
caaaataatctttacagggttaatttagtcttcattatacttttcactggtgaatgtgtt
ctgaaggtggtttcactccgacactattactttaccatcggctggaacattttcgacttt
gtggtggtgattctctccatagttggcatgtttcttgcagaaataattgaaaaatacttt
ttttcgccaaccttgttcagagttattcgacttgccagaattggccgcattcttcgactt
attaagggtgctaaaggaatccgcacacttctctttgccttgatgatgtcacttcctgcc
ttgttcaacattggtctactgctctttttagttatgtttatctatgccatctttggcatg
tcaaattttgcctatgtcaaaaaggaatctggcattgatgacatgttcaactttgaaacc
tttggcaacagtatgatctgcttgtttcaaattacaacatctgctggttgggatggtttg
ctggctcccattcttaacagagggcagccagactgtgacagtgagatagatcatccaggc
agttctataaaaggaaactgtggaaacccatctgtggggattctcttctttgtcagctac
gttattatatcttttctaattgtgataaacatgtacattgccattattctggaaaacttt
agcgtcgctactgaggagagtgcagaaccactaagtgaagatgattttgaaatgttctac
gaagtctgggagaagtttgaccctgatgcgactcagtttatggaatatggtaaactgtcc
aattttgctgatgctttggatcccccgcttcgtgtaccaaagccaaataaaatccagctc
attgccatggacctgcccatggttagtggggagcgaattcattgccttgacatattgttt
gctttcacaaaacgtgtgttgggggagggtggagaaatggatgctctccgtgggcaaatg
gaagaacgcttcatggcatcaaatccatccaaggtctcttatgaaccaataaccacaact
ctacgtcacaagcaggaacacatgtctgccattgtcattcagagagccttcagatgctac
ctattcagacgaacagttaaaaaagccttttatttgttcaaagaaaaaatcaacgcaggt
gaaaatctacttgacaaagaagaaatggtgattgataaatttaattacaactcaaacaca
gataaaatggatgtaatgccttccatggcttccccaccttcctatgacagtgtgaccaaa
ccagacaaatatgagagagacaaagcagagaaggatgacaggagcaaatag
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