Polyodon spathula (Mississippi paddlefish): 121323340
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Entry
121323340 CDS
T07273
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121323340 (trpc1)
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121323340 (trpc1)
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Ortholog
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
RIN1
Motif
Other DBs
NCBI-GeneID:
121323340
NCBI-ProteinID:
XP_041120279
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Position
11:complement(35160072..35177197)
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AA seq
791 aa
AA seq
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MRINVLPFSFSVIMAALYQSTDSSSPDKYLALKDVREVKEETNLDEKLFLLACEKGDYYM
VKKLLEEKRHGELNVNCVDVLGRNAVTISIENENLDILQLLLEHGCQTTDALLVAIDSEV
VGAVDILLNHRPRRLSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYEELAKQCTMFAKDLLAQARNSRELEVILNHTCNDEPVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGQMAGYRRKHSCKKILTVLSVGFLWP
VLSICYLLAPKSRVGHVIHTPFMKFIIHSASYFTFLLLLNLYSLVYNEDKKNTMGPALEM
IDYLLIVWIVGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKVVAHNKFPD
NADRKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSVLGPLQISMGQMLQDFGKFLG
LFLLVLISFTIGLTQLYDKDRATHVEKDCVGIFCQRQNNDTFHSFIVTCYALFWYVFSLA
HVALFVTRFSYTEELQSFVGALIIGTYNVVVVIVLTKLLVAMLHKSFRQIANHEDKEWKF
ARAKLWLSYFDDKCTLPPPFNILPSPKTVCYIVTSLSKWICSHTTTGKVKRQNSLKEWRT
LKQKRDENYQKVMCCLVHRYLTSTRQKMQSTDQPTVENLNELRQDLSKFRNEMRDLLGFR
TSKYAMFYPRN
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcaatgtgttgccgttttctttctctgtaataatggctgctctttatcagagc
accgattcttcctctccagacaaatacctggcactaaaggatgtcagagaagtaaaggag
gagacgaacctggacgagaaactcttcttgctggcgtgtgaaaaaggtgactactatatg
gtgaaaaaactccttgaggagaaaagacacggtgaactcaatgtaaactgtgtggacgtg
ttgggacgcaatgcagttaccatatcaattgagaatgagaacctggatatactgcagctt
ctgctggaacatgggtgtcagacgacagatgcgcttttggtagcaatcgactcagaagtg
gtgggagccgttgatatactactcaatcatcgaccaaggcgattgtcgaagccttcaata
gccaaactgatgcagcgtattcagaacccagagtactccacaaccatggacgtggccccc
gtcattctagcggctcatcgcaataactatgaaatcctcaccatgctgctgaagcaggac
atctcgctgccccggccccacgctgtggggtgtgaatgcaccctgtgcaatgccaaaaat
aaaaaggacagtcttcgccattcccgatttcgcctcgatatctaccgctgcctggcaagc
ccctcattgataatgctgaccgaggaggacccgatattaagagccttcgagctcagcgct
gatctgaaggaactcagtctagtggaggtggagttcaggaatgattacgaggagctggcg
aagcagtgtacgatgtttgcgaaggatctgcttgcccaggccaggaactcgagggagctg
gaagtcattctgaaccacacctgcaatgacgaacccgtggacaagcgaggcctgctagag
gagcgaatgaacttgagccgccttaaactggccatcaaatacaaccagaaagagtttgtt
gcccagtcaaactgtcagcagtttctgaacactgtctggtttgggcagatggctggttac
aggcggaagcactcgtgtaagaagatcctgactgtgctctcggtgggcttcctgtggccc
gtcctgtcgatctgttatctgctggctcccaagtcccgcgtgggccacgtcatccacacg
ccgttcatgaagttcatcatccacagcgcctcgtacttcaccttcctgctactgctcaac
ctgtactcgctagtttacaatgaagacaaaaagaacaccatgggccctgctctggagatg
atcgactacctgcttattgtctggattgtaggaatggtgtggtcggatgtgaaaaggctg
tggtatgaggggctggaagactttttggaagaatcccgcaatcagctcagctttgtcatg
aactccctctatttggcaactttcgccctcaaagttgtggctcacaataagtttccagac
aatgcagacaggaaggactgggatgcgttccacccaactctggttgctgagggactgttt
gcctttgccaatgtgctcagctaccttcgtctgttcttcatgtacacaaccagctctgtc
ctgggacccttgcagatctcgatgggacaaatgctgcaagattttggaaagttcttgggt
ctgttcctgcttgtcctcatctcattcactatcggtctgacccagctttatgacaaggat
cgtgccacacatgtggagaaggactgtgtggggatcttctgtcagcggcaaaacaacgat
actttccattcgtttattgtcacctgctatgcgcttttttggtatgttttttcactggcc
cacgtagctctgtttgtaacgaggttcagttacacagaggagctgcagtcatttgtcggg
gccttgattatcggcacatacaacgtggtggttgtcatcgtccttactaagcttcttgtg
gccatgctgcacaaaagttttcggcaaatagcgaaccatgaggacaaggagtggaagttt
gcccgagctaagctctggcttagctactttgatgacaagtgcaccctgcctccccccttc
aacatcctcccctccccgaagaccgtctgctatattgtcactagcctcagtaaatggatc
tgctctcacaccacaacaggcaaggtcaaaagacagaacagcctcaaagagtggaggacc
ctgaaacagaaacgggatgaaaactaccagaaggtcatgtgctgtctagttcaccgctac
ctgacttctacaagacagaagatgcagagcactgaccagcctactgtggagaacctcaac
gagcttcgacaggacctctccaagttccgcaacgagatgagagacctcctgggattccgc
acctccaagtacgccatgttttatcccagaaattaa
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