Polyodon spathula (Mississippi paddlefish): 121323354
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Entry
121323354 CDS
T07273
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121323354 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
121323354 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121323354 (ercc3)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121323354 (ercc3)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121323354 (ercc3)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121323354 (ercc3)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121323354 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
121323354
NCBI-ProteinID:
XP_041120303
LinkDB
All DBs
Position
11:25208403..25226304
Genome browser
AA seq
783 aa
AA seq
DB search
MGKRDRSDREKKRLKKRCQDDDDDDEDEAMGSESQEAIPAAAGKQVDEAAIKIDEYGAKD
YRLQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPSHAHEYKLTA
YSLYAAVSVGLQTTDIIEYLQKLSKTSVPEGIIQFIKLCTVSYGKVKMVLKHNRYFVESA
FPEVIQRLLQDSVIRNSRLRNAEGEETELITETFSSKSAISKSVQGSGAPSTSQGVEDKQ
GSSEVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEEVQKRCIQLEYPLLAEYDFRN
DTVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRK
RCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTKR
SWEAERVMEWLRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVD
LNFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFFREYVAIKSRKRILLYTMNPN
KFRACQFLIRFHERRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHN
PKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYF
YSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITRMAGMEEDDLMFSSRDEQQQLLQKVLAA
SDLDAEEEIVQGEFGGKSLVYRRPGTMSSMSGADDNVYMEYHASRSRVSFGKNIHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagggatagaagcgacagagagaaaaagagattaaagaagcgctgccaggat
gacgacgacgatgatgaggatgaagccatggggagtgaatcgcaggaagctatacctgcg
gcagcagggaagcaggtggatgaagcggcaatcaaaatagacgagtatggagccaaagac
tacagactgcaaatgctcttaaaaaatgaccattcctctcggcctctctgggtggctccg
gatggccacattttcctggaagctttctctccagtgtacaaatatgctcaagacttcctg
gtggccatagcagagccggtgtgtcgtccctcccacgcccacgagtacaagctgactgcc
tactccctgtacgctgcagtgagtgtgggactacagaccaccgacatcatagagtaccta
cagaaactcagcaagacctctgtccctgaggggatcattcagtttatcaagctgtgtact
gttagctatgggaaggtgaagatggttctgaaacacaataggtactttgtggagagcgct
ttcccagaggtgattcagaggctgctgcaggacagtgttatccgcaactccaggctgagg
aatgcagagggagaagagactgaacttatcacagagaccttctccagcaagtctgcaatt
tccaaatccgtccaggggagcggggctccctcaacctcccagggtgttgaggacaagcag
ggcagctcagaggtgccggaggacatcttcagctactatgagcagatggacaaagaagag
gaggaagaggaagaaacgcagactgtgtcttttgaaatcagacaggagatgattgaggag
gttcagaagcgctgtatccagctagagtaccccctgctggcggagtatgacttccgcaac
gacactgtcaaccccgacatcaacatcgacctgaaacccaccgcagtactgcggccctac
caggagaagagcctgcggaagatgtttgggaatgggcgtgccaggtcaggggtcatcgtc
cttccctgtggtgcagggaagtctcttgtcggggtgactgccgcctgcacggtgcgaaag
cgctgcctggtcctggggaactcgtctgtgtcggtggagcagtggaaggcccagttcaag
atgtggtccaccattgatgacagccagatttgtcgcttcacctccgatgccaaggacaag
cccattggctgctcgatagccatcagcacctactctatgctggggcacaccaccaagaga
tcctgggaggcagaacgagtcatggagtggctcaggagtcaggagtgggggctcatcata
ctggacgaggtccacaccattccagccaagatgttcagacgagttcttacaatagtgcag
gctcactgcaagctgggcctcactgccactctagtcagagaggacgataagattgtggat
ctcaatttccttatcggccccaaactatttgaagccaactggatggagctgcagaacaat
ggctacattgccaaggtgcagtgtgcagaggtgtggtgcccaatgtcccccgagtttttc
cgtgagtacgtggccatcaagtcgaggaagcgaatcctgctgtacaccatgaaccccaac
aagttccgtgcctgccagttcctgatccgcttccacgagcgccgcaacgacaagatcatg
gtctttgccgacaacgtctttgcactcaaagagtatgccattcgcctcaacaagccctat
atatatggacccacctcccagggagagaggatgcagatcttgcagaacttcaagcacaac
cccaagatcaacactatttttatatccaaggttggtgacacatcctttgatctacctgaa
gcaaacgtgttgattcagatctcatcccacggtggctctcgaagacaggaagcccagaga
ctggggagagtcctccgggccaagaaaggtatggtggcagaggagtacaacgcctacttc
tactcgctggtctcgcaggacacccaggagatggcatactcgaccaagaggcagcgcttc
ctggtggaccaaggctacagcttcaaggtgatcactcgcatggcagggatggaagaggat
gatctgatgttctcctctcgagatgaacagcagcagctcctccagaaagtcctggctgcc
tctgatctggacgctgaggaggagatcgtgcagggagagttcggaggaaaatccctggtt
tatcggcgtcctggcacgatgagctccatgtctggggctgacgacaatgtttacatggaa
taccacgcttctaggagcagggtgtcctttgggaaaaacattcacccgctgttcaaacgt
ttccgcaaatag
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