Polyodon spathula (Mississippi paddlefish): 121323523
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Entry
121323523 CDS
T07273
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121323523 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121323523 (sh3rf1)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121323523 (sh3rf1)
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121323523 (sh3rf1)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121323523 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-RING_4
zf-C3HC4_4
Prok-RING_4
zf-rbx1
zf-Nse
DUF1272
zf-RING_10
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
121323523
NCBI-ProteinID:
XP_041120564
LinkDB
All DBs
Position
1:complement(84896425..84967472)
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AA seq
883 aa
AA seq
DB search
MKSPAMDESALLDLLECPVCLERLDATAKVLSCQHTFCKRCLQGILNSRSELRCPECRTL
VDCSVEELPSNILLVRLLDGIKQRPRKPGVGSSGNGTNDNSSSSSVARTQSSAIRDLQSN
QNGQQQRMQARSPPVRGVPQLPCAKALYNYDGKEPGDLKFSKGDIIILRQQVDKNWYHGE
INSVHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFSKDDILTVIRRVDE
NWAEGMLGDKIGIFPISYVEFNSAAKQLLELDKPYGSGDLGEGTSAAGQSNGTQKHPDAK
KNTKKRHSFTSLTMSNKSSQASQNRHSMEISGPVLISSSNPTAAARIGELAGNLSCSAPS
QVHIGTTGLIVTPPPSSPITTAATFTFQAGEITCSAVSGDSLPPPPPPPPVAAVVASTSA
ASASAVGQRPTPGPAEQAAHARTQQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERCQD
GWFKGTSMHTGKIGVFPGNYMAPVTRNGSGTTQSKVPLAVVSQVGRGVTLVSPSTSATGS
QQKPPGSSGPDFNKTLNANTVPTAVVSAAHIQPSNQQTKVLVHVTGQMTVNQARSAARTA
AAHSQERPTAAVTPIQSQSPVAYITAVSVPSHIPVSAQQLPAQAVYTIPPTLTWSTIPLS
CATASLTPPNVNATSLDSEGLLRPVAVLAVPITPMSAVPAGTAVANRLEKDNNKKEKKGL
LKLLSGASTKRKTRSSPPSSPTLESEQAAAEVLQGAMGLEVSSATGNHGRAVSCPVDTEA
AGAASCETTLHRKTSSLDSSAPIAPPPRQPCSSMAAHQQEARPILCERYRVVVSYPPQSE
AELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVESI
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcccagcaatggatgaatcggccctgttggacctgctggagtgtcctgtttgc
ttagagcgccttgatgctactgcaaaggtcttgtcgtgtcagcacacgttctgcaagcga
tgtctgcaggggattctgaattccaggagtgagctgcgctgcccagagtgcaggactctg
gtggactgcagtgtggaagagctccccagtaacatcctgctggtccgactactggatggc
attaaacagagaccgaggaaaccaggagtgggcagcagtggcaacggcaccaacgacaat
agcagcagcagtagtgtggcgcggacacaaagcagcgccatacgagacctccaaagtaac
cagaacggacagcagcaaaggatgcaggcaaggagccctccagtcagaggtgttcctcaa
ttgccatgtgccaaagcgttgtacaactatgatggcaaagagcctggagacctcaagttc
agcaagggggatattatcatcctgcgccagcaagtggacaagaactggtaccacggggag
attaacagcgtccatggcttcttcccaactaactttgttcagatcatcaaacccttacct
cagccaccaccacagtgcaaagctctttatgatttcgaagtaaaggacaaggaagctgac
aaagactgcctgcctttctccaaggatgacatactaacagtgattcgtcgagttgatgag
aactgggcagaaggaatgttgggagataaaataggaatttttcctatttcttatgttgag
tttaactctgccgcaaagcaactgcttgagctggacaagccctatgggtcaggggattta
ggcgaggggacctcagcagctggtcaaagcaatggcacccaaaagcacccagacgccaag
aagaacaccaagaaacggcattcgtttacctctctgaccatgtctaacaagtcgtcgcag
gcctcccagaaccgtcattccatggagatcagcggccctgtcctcatcagctccagcaac
cccacagcagccgctcgcattggggagctggctgggaatctctcctgcagcgcgccttct
caggtccatattggcacaactgggttgattgtgaccccccctcctagcagtcctatcacc
acagcagcgacctttactttccaagcaggagaaattacctgctcagcagtatcaggggat
agcctcccccctccgccacctccccctcccgttgctgcagtggtagcctccacctcggca
gcctctgcttcagcagtaggacagagacctacccctggacctgctgagcaggctgcacac
gccagaacacagcagcgccccactgtgtacgtagctatgtttccttacacccctcggaag
gaggacgagcttgagctgaggaaaggagagatgtttctagtgctggagcgctgccaggat
gggtggtttaagggaacgtccatgcacacaggaaagattggcgttttccctggaaactat
atggctccagtgacaagaaatggttcaggtacgactcagtcaaaggtgcccttagctgtc
gtctctcaggtgggccggggagtgacacttgtgagcccctccaccagtgcgactggatct
caacagaaacccccaggcagcagtggccctgatttcaacaaaaccctgaacgccaacacg
gtaccaacagccgtggtgtctgcagcacacatccagcccagcaaccagcagacgaaagtc
ctggtgcacgtgaccggacaaatgacggtcaaccaggcccgcagtgcagctagaaccgct
gcggcacacagtcaggagcggcccacagcagcagtgacgcctatccaatctcagagccct
gtggcctacatcactgctgtctctgtaccttctcatatcccagtctctgctcagcagctc
ccagctcaggctgtctacaccattcctcccacattgacctggtccaccatcccactgagc
tgtgctactgcctccctcacaccccccaacgtcaacgccacctctctggatagtgagggc
ctcctcaggcccgttgctgtgctagcagtccctatcactcccatgagcgcggtgcccgcc
gggactgccgtggcaaacagactggaaaaggacaataataagaaggagaagaaaggtttg
ttgaagttgctttctggagcctcgacaaaacgaaaaacccgttcttccccaccttcctct
cccacactggaatctgagcaggcagctgccgaggtgctgcagggagcgatgggtctggag
gtttcctctgccacaggtaaccatggccgggcggtctcctgccctgtagatacagaggct
gcaggggcggcatcctgtgaaacaacactacaccgcaagaccagctctctggactccagc
gcacccatcgctcctcctcccaggcaaccctgctcctccatggccgcacaccagcaggag
gccaggcccattttatgtgaaaggtacagggttgtggtgtcctacccaccccagagcgag
gctgagctagagctcaaagaaggggacattgtgtttgtgcacaagaagagagaggacggc
tggttcaaaggcacactccagagaaatggaaagactggcctgttccccggcagctttgtg
gagagcatctga
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