Polyodon spathula (Mississippi paddlefish): 121323536
Help
Entry
121323536 CDS
T07273
Symbol
sned1
Name
(RefSeq) sushi, nidogen and EGF-like domain-containing protein 1 isoform X1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121323536 (sned1)
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
121323536 (sned1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
NIDO
EGF_TEN
EGF_2
fn3
EGF_Teneurin
EGF_CA
cEGF
MAGP
EGF_3
Motif
Other DBs
NCBI-GeneID:
121323536
NCBI-ProteinID:
XP_041120582
LinkDB
All DBs
Position
11:42240266..42320685
Genome browser
AA seq
1482 aa
AA seq
DB search
MGLGVALPCLWTLISLELLALVEGTVPLEDFYPFGVEHGDSSTGKQDDGGSGLLEISVSF
PFFGDRHSGLYVNNNGLVSFLREVSQFTPVAFPIAGDRRVLAPFWSDVDNRRAGEVYYRE
SKDPAILQRATEDIQRYFPEFPEFTATWVLIATWHKVTFFGGSSFSPVNTFQGVLITDGE
LSFTIFHYEQITWTTGMHASSGGDFAGLGGIAAQAGFNAGDGKRYFNIPGSRTEDIVDVE
ETTNVGIPGRWVFRIDDALVLMGGCNDSGSVCLNLRPCLNRGRCIDDCITGNPSYTCSCP
SGYTGKRCQIDVNECSAYPCQNGGSCIDGPNNFTCLCLPGFSGPLCEIDVNECSSHPCQN
DGTCIDGQNSFTCLCPPGYKGPVCEIDVNECSSQPCQNGGTCIDGQNSFTCLCPSGYKGP
VCEIEMDECEGSLCRNGGVCVDGVGHFTCVCEPGYTGETCETEIKECDSQPCLNGGQCID
RVNNYTCVCPDSFTGQHCETEVIPCKGDACLNRHTCNYIRPGRYVCTCSPGYYGNNCQYE
EFEACPLKPCLNGGSCSRANGTAVCICPPGVSGDYCEEEITQTPCSFNKPCPDGGPCMEY
GGTYLCTCQTEVVERDIQPSVCDSGPCLNGGFCSERDGGYICDCKLGYRGKHCEKVRLSI
CASSPCRNGGSCREEAGGYHCSCPYRFTGRHCEIGKPDPCSSSPCGNGGTCFHYIGKYKC
ECAGGFTGRHCENVLDPCLSAPCKNGGNCTEHIKGTYQCLCQPGYHGEHCEREMDCGAPV
QVKHAQVQYTSSLPGSSALYTCHPGFTPVPGATVSICGGQGAWSQPPVCEEINECLSQPC
LNGGTCKDRVNTYLCACEEGFAGPNCQTELDECLSEPCKHGGSCMDQPGSYFCQCPQGFT
GQDCETELDGCGSSPCLNGGVCKGHRGIYLCVCKEGFMGETCQTAEDPCSLQPCGSRGYC
RSDKSGQYICTCKVGYTGRDCEKELMPPAALQVVRVEEGEVEVSWRSPDAPQELIDGFAV
TYTPIGGGDRKTDYLDKQRSTHLLRSLAPGRLYNITAFSVKRNANNNDISQPVLTIVRTR
PRKVEDFHVANVSTSRVWLKWALHNIRHSTVNRVRVSLRSSQSAENITVLLNTNTTEHSF
GSLLPGEMYTVDIVTQSGLKPEELPTVSQSVGPIRLWTRPLAPVNMSLSFITATTAQITW
ERPLIGSLDGYVINVTSSRTTKSRYLPNGKMSAYTVRELSPGLQYRLSLTAVRSTDREQL
HSDPLRLNITTMLSDERSGRRESAGSAGRATQVVSGRAPSSRHLPTVQLDRENFDELPRY
TELIDGRGRITAKFSNLQNKAITHRARPESPIKLENIEETTNKISLALEIPEAENRKTEE
QAGCKSNLCRNGGTCVKGPDSYLCECTVGFKGKRCELFCQRVPHPCTRLYSETKTIPVWE
GGVCHYLYKRTYKVHQDICYREICEPLLQKKPPRDRRLYRHQ
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atggggctgggagtcgctctgccctgcttgtggactttaatctccctggaattgctggct
ctggtggaggggactgtgcctctggaggacttctacccctttggagtcgagcatggagac
tccagcacaggaaagcaggatgacgggggctctggtctgctggagatctctgtcagcttc
cccttctttggggacaggcactcagggctctatgtgaacaacaatggtctggtgtcgttc
cttcgcgaggtgtcccagttcacgccagtggcgttccccattgcaggagaccggcgagtc
ctagcacctttctggtctgacgtggataacaggcgtgccggggaggtgtactaccgcgag
agtaaggaccccgccatcctgcagagggcgacagaggacatccagcgctacttcccagag
ttccctgagttcaccgctacctgggttctgattgccacctggcacaaagtcaccttcttt
gggggcagctccttctcaccggtgaacacgttccagggggtgctcatcacggatggggaa
ctctccttcactattttccactacgagcagatcacctggaccacagggatgcatgccagt
agcgggggtgacttcgctgggctgggagggatcgctgcacaggcaggcttcaacgcagga
gatgggaagagatatttcaacatcccgggctctcgtaccgaggacatcgtggacgtggag
gagaccactaacgtgggcatcccagggcgctgggtcttccgcattgatgatgccctggtg
ctgatgggcggctgcaacgactcgggctctgtttgccttaacctgcgcccctgtctgaac
agaggccgctgcattgatgactgtatcactggaaacccctcgtacacctgctcctgtccc
tctggctacactggcaaaaggtgtcagatcgatgttaatgaatgctccgcatacccctgt
cagaatggtggatcatgtatcgatggaccaaacaacttcacctgcctgtgcttgcctggg
tttagtggacccctttgtgagatagatgttaatgaatgctcttcgcacccctgtcagaat
gatggaacgtgcatcgacggacaaaatagctttacctgcctgtgcccgcccgggtataag
ggacctgtttgtgagatagatgttaatgaatgctcttcgcaaccctgtcagaatggtgga
acatgcatcgatggacaaaacagcttcacctgcctgtgcccgtcaggatataagggacct
gtttgtgaaatagagatggatgaatgcgaagggagtctgtgtagaaacggaggggtgtgt
gtggacggagttggtcatttcacctgcgtgtgtgaacctggctacactggagagacctgt
gaaacagagataaaggagtgtgactcgcagccgtgtttaaatggaggccagtgcattgac
agggtgaacaactacacctgcgtgtgtcccgactccttcactgggcagcactgtgagaca
gaggtgatcccatgcaaaggcgatgcttgcctgaatcgacacacttgtaactacatccga
ccagggcgttacgtctgtacatgttcacctggatactatggcaacaactgtcaatacgag
gagttcgaagcatgccccttgaagccctgtctaaatggagggtcctgttccagagccaac
ggaactgcagtctgtatctgtccaccaggagtcagtggagattactgcgaagaggaaatc
actcagaccccctgcagcttcaacaagccatgcccggacggaggaccctgcatggagtat
ggggggacctacctgtgcacctgccagactgaggtggtggagagagacatacagccctct
gtgtgtgactccgggccctgtctaaacggtggcttctgttcagagagggatggtggctat
atctgtgactgtaagctgggctacaggggcaagcactgtgagaaagtcaggctgagtatc
tgtgcttccagtccgtgtcgaaacggagggtcgtgccgcgaggaggctggaggataccac
tgctcctgcccctacaggttcaccgggaggcactgcgaaatcgggaagcctgacccctgc
tcgtccagcccctgtgggaatggagggacatgtttccactacatcgggaagtacaagtgc
gagtgtgctggcggattcaccgggagacactgtgagaacgttctggacccctgtctctca
gctccctgtaagaatggagggaactgcactgagcacatcaaagggacttaccagtgcctg
tgccagcctggttaccatggagaacactgcgagagggagatggactgtggagcccctgtg
caggtgaagcacgcccaggtccagtacacctcctccctgcccggctccagcgccctgtat
acctgtcaccccggattcacccctgtcccaggagccacagtcagcatctgcggaggccag
ggagcctggagccagccccccgtgtgtgaagaaatcaacgagtgtctctcccagccctgc
ttgaacggcgggacgtgtaaagatcgagtcaacacttacctgtgtgcttgtgaggaagga
tttgccggacccaactgtcagacagagctagatgagtgcctctctgagccctgtaagcac
ggaggaagctgcatggaccagcctgggtcctacttctgccagtgtccacaggggtttaca
ggccaggactgtgaaacagaactggatggctgtgggtcaagcccctgtttaaatggtgga
gtttgcaaagggcatagagggatctacctgtgtgtctgcaaggagggcttcatgggagag
acctgccaaacagcggaagacccctgctcactgcagccttgtggaagccgagggtactgc
cgcagtgacaaaagtgggcagtacatctgcacctgtaaagtaggatacactgggagggac
tgtgaaaaagagctgatgccccctgcagccctgcaggtggtgagggtggaagagggcgag
gtggaggtgagctggcgctcaccggacgccccccaggagctgattgacggctttgctgtc
acctacacacccattgggggtggcgatcgcaagaccgactacctggacaagcagcgttcg
acccacctgctgcgctcgctggcgcccgggcgtctctacaacatcacagccttctccgtg
aagcgcaacgccaacaacaacgacatcagccagcccgtgctcaccatcgtacgcaccagg
ccccgcaaagtagaggacttccacgtagccaacgtgtccacatcccgcgtgtggctgaaa
tgggccctccacaatatcagacactccacagtcaacagggtccgtgtctcgctgcgctcc
tcccagagtgcggagaacatcacagtgctgctcaacaccaacaccacagagcacagcttc
ggatccctgcttcctggggagatgtacactgtggacattgtgactcagagcgggttgaag
ccagaggaactgccgactgtgagccaatcagtagggccgattcgcctgtggacccggccc
ctcgcccctgtgaacatgtcattgtccttcattaccgcgacaacggcacagataacttgg
gagcggcctctgattggctccctggatggctacgtgatcaatgtcacgtccagccgcacc
acgaagagccgctatctgccgaacgggaagatgagtgcctacactgtgcgagagctgtcc
ccgggcctgcagtaccgcctgtccctcactgccgtgcgcagtactgaccgcgagcagctg
cacagcgacccgctccgtctcaacatcaccaccatgctgtctgatgaaaggtctggcagg
agagagagtgctgggtctgcgggtcgagccacccaggtggtgagcggccgagcccccagc
agccgtcatcttcccacagtccagctcgacagggagaactttgatgagctccccagatac
actgagctgattgacggccggggaagaatcactgccaagtttagcaacctacagaacaag
gccatcacacaccgtgcacgacccgagtctccaatcaagttagagaacatagaggagaca
accaataaaatcagcctggccctcgagatcccagaggcggagaacaggaagacagaggag
caggcgggctgcaagtcaaacctgtgtcgaaacggagggacatgtgttaaaggaccggac
tcctacctgtgtgaatgcactgtgggctttaaaggaaagcgctgtgagctcttctgtcag
agagttccccacccttgtacacgactctactccgaaacaaagaccatcccggtctgggaa
gggggggtttgccattacttgtataaacggacctataaggttcatcaggacatttgttac
agggaaatctgtgagccgcttttacagaagaaacctccaagagacagacggttgtatagg
caccagtga
DBGET
integrated database retrieval system
