Polyodon spathula (Mississippi paddlefish): 121323811
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Entry
121323811 CDS
T07273
Name
(RefSeq) homeobox protein six1b
KO
K15614
homeobox protein SIX1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121323811
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
121323811
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
SIX1_SD
Homeobox_KN
Homeodomain
HTH_3
YdaS_toxin
HTH_72
Phage_mat-A
Motif
Other DBs
NCBI-GeneID:
121323811
NCBI-ProteinID:
XP_041120969
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All DBs
Position
12:4312200..4314402
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AA seq
284 aa
AA seq
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MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR
GNFRELYKLLESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT
IWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
AAEAKERENSENNNSGNNKQNQLSPLDGGKSLMSSSEDEFSPPQSPDQNSVLLLQGNMNH
SVGSSYPLTGLSASQSVHSIQGHPHQLQDSLLGPLTSSLVDLGS
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgctgccttcattcggctttacccaggagcaagtggcctgtgtgtgtgaggtg
ctccagcaaggggggaacttggaaagactgggacggtttctgtggtcccttcccgcgtgt
gaccatctacacaagaacgaaagcgtcctgaaagctaaggcggtggtagcgtttcaccgt
ggcaatttcagagaactgtacaaattactagagagccaccaattttccccacacaaccac
cccaaactccagcagctgtggctgaaggcgcactacgtcgaggcagaaaaactgagagga
agacctctgggcgcagtcgggaaatacagggtacgaagaaaattccctttgccccggaca
atttgggacggggaagaaaccagctactgctttaaggaaaaatccaggggcgtactgagg
gaatggtacacccacaacccgtacccgtctccgcgggagaagagagaattagcggaggcc
acgggactcaccacaacgcaagtcagcaactggttcaaaaatagaagacagcgggacaga
gccgcagaagctaaagaaagggagaacagtgaaaacaacaactctggcaacaacaaacag
aaccagctatccccactggatgggggcaaatctctaatgtcaagctcagaagacgagttt
tcgcccccgcagagccctgatcagaactcagtcttactgttgcagggaaatatgaaccac
tctgtgggctccagttatcccttgaccggtctaagcgcttctcagtctgttcatagcatt
caaggacatccgcaccagctccaagactctcttctcggacccctaacttctagccttgtg
gatcttggctcttaa
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