Polyodon spathula (Mississippi paddlefish): 121323983
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Entry
121323983 CDS
T07273
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121323983
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121323983
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121323983
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121323983
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Protocadherins
121323983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
PDGLE
Syndecan
Motif
Other DBs
NCBI-GeneID:
121323983
NCBI-ProteinID:
XP_041121276
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Position
12:29396181..29531343
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AA seq
1199 aa
AA seq
DB search
MDTLLGSRIVWTILLVSCCFRTVRSSILYKVQEEQPPNTLIGSLASDQGLPDSGHLYKLE
MGSPYLRVDGKTGDIFTTETPIDRETLKDCQNLFEGEPCKLEFEVSITDLMQNHGTRLLE
GKIEVLDINDNTPQFSSPILSLSIPENTLLGALFPIPLATDRDSGRNGVANYELSVGTEG
QGLFGLQVAEEQEEKQPQLIVMGNLDREHKDSYDLNIKVEDGGNPPRYSSALLRVSITDA
NDNLPKFEKAQYEAELLENSPVGHSVLQVKANDSDMGPNGEIDYAFYQAVDVVQRLLRLD
RTSGVISVKGLVDREEITTFRFYVIARDKGPIPKSSKTLVIIHVKDQNDNAPTIEIRGIG
LVIHEDGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLKPASESASEKK
RKYFLQTTTPLDYELVKQYRIEIVAVDSGNPALSSTNSLKVQVTDINDNVPVFSPSLFQV
DFFENNKPGDRVLAVVATDADSGSNAELTYSIILDPSTKGLFEINEDTGEVKAKNQLDRE
HRERYEFIVAAADKGDPSLRGTATVIVRVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGM
VTVIDSDKGENAHVHLSVEPDNGKFVIQNGSGTILSSISFDREKESTYTFRLKAVDGGDP
PRSSYVGVTINVLDENDNAPYITRPSNSSYNHLAPFTSPDTRVEKVEAEDIDTGPNAELV
FSIIGGNPHELFHISPSDGEITLVKEILRKHIGLHRLVVKVSDKGKPPRHTTALVHIFVN
ETISNITVVEALVGHSLYTPLDTDIAGDPDYSHATQRSNILYGSLAGIAGVIVVIVVVMV
IRYYLQKEAKSGYQAGKKENKDLYAPKQGPKGNKGKKGKKGKAPKPAKPLEEDEEASLQK
GLKFNLINDGVNDSPRIHLPLNYQPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQ
DLPATNTFVGTGDNTSTGSDQYLDYSYKANPPKYSNKQLPHRRVTFSTANQAQDLQDPSQ
HNYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENGLRPLPDVA
MTGNCTRECTEFGHSDACWMPGQPSPTRKTKNTPKLSTFVPYQERDNQDRLTNGSPRLVE
ERNAKVANIRFLPPYSAFSSTSHEPSKDSPMEEIPLTQASEFQQATTPTTQNSKREIYL
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggatacattgcttggatcacgaattgtgtggaccatcttgctggtctcctgctgtttt
aggactgtgagaagtagtatcctctacaaagttcaggaggagcagccacccaatacactg
attgggagcctagcgtctgaccaaggacttccagactctggccacctctacaagcttgaa
atgggtagcccctatcttcgtgtggacggcaaaactggggacatcttcaccacagagaca
cccattgaccgagagaccctgaaagactgtcagaacctctttgaaggggaaccatgcaaa
ctggaatttgaggtgtctatcacagacctcatgcaaaaccatggcactcgactattagaa
ggcaaaattgaggtattggacatcaacgacaacacaccgcagttctcttcccctattctt
tccctctccatcccagagaataccctcctaggcgccctctttcctatcccattggccact
gacagggattctggccgcaatggggtagctaattatgagttgtcggttggcactgaagga
caggggctgttcggactgcaggtagcggaagagcaagaggagaaacagccacagctcatt
gtgatgggcaacttggatcgagagcacaaggactcgtatgacctgaacatcaaagtggaa
gatggtgggaatccgccacgctacagcagcgccttgctcagggtcagcatcactgatgcc
aatgacaacctacctaaattcgagaaggcacagtacgaggcagagctgctagagaacagc
cctgtgggacactctgtgctccaggtaaaagccaatgactcagacatgggtcccaatggg
gagatagattacgccttctaccaagccgttgatgtggtgcagagattgctgcggcttgat
cgcaccagtggtgtgatctctgtgaaaggacttgtggacagggaagaaattactacgttt
aggttctacgtgattgcccgggataaaggacctatccctaagagctccaagaccttggtg
ataatacatgtaaaggaccagaatgataatgcacccaccattgagatccgagggattggc
ctggtaattcatgaagatggagtagccaacatctctgaggacatgcccattggaacccca
gtggccctggtgcaagtctcggatcgtgatgaaggggagaacgcggtggtcacttgtgtg
gtggctggtgatgtccccttccagttgaagccagctagtgaatctgcaagtgaaaaaaaa
aggaaatactttctacagactaccacccctttggattacgaactggtaaagcaataccga
attgaaattgtggcagtagattcaggcaatccagctctatctagcaccaactccttgaag
gtccaagtgacagacataaacgataatgtccctgtgttctcgcccagcctttttcaggta
gatttttttgaaaacaacaagcctggggacagggtattggctgtagtggctacagacgca
gatagtggctccaatgcagagctgacatactccataatcctagacccatcaaccaaaggc
ctctttgagatcaacgaagacacaggggaagtgaaagcgaaaaatcagctagaccgtgag
catagggagcgctatgagtttatagtggctgcagctgacaagggtgaccctagtcttcga
gggacggctacagttatagtgagagtgttggatcgcaatgacaatgatccaaagttcatg
ttaagtggctacagtttctctgtgttggagaatatgccccctcttagtccagttggcatg
gtgacagtcattgactctgataagggtgagaatgctcatgtacacctttcagtagagcca
gataatggcaaatttgtcatccaaaatggttcaggcactattctctccagcatatctttt
gaccgtgagaaagaaagcacctacaccttccgcttaaaggctgtagatggaggagatcca
cctaggtcttcctatgttggggtgactatcaatgtccttgatgagaatgacaatgccccg
tacatcacacggccttctaattcctcctacaaccatctagcaccattcaccagccctgat
acccgggtggagaaggtggaggctgaagacattgacactggccccaatgcagagctagtc
tttagcattataggtggaaatccccatgagctcttccacatttccccctctgatggagag
atcactttagtcaaggaaatacttcggaagcacattggccttcatcgactggtggtcaag
gtgagcgacaaaggaaagcccccaagacatactacggctctagtgcacatttttgtaaat
gagaccatcagcaatatcacagtggtggaggctctggtagggcatagcctctacacaccc
ttagatacagatattgctggggaccctgattacagccacgctacccaacgtagcaacatc
ctctacggtagccttgcagggattgctggggtcattgtggtcattgtagttgtgatggtg
atccgctactacttgcagaaggaggcgaagagtggttatcaagctggaaaaaaggaaaac
aaggacctgtatgccccaaaacagggaccaaagggtaacaaaggcaagaagggcaaaaag
ggtaaggcccccaaaccagccaagcccttagaggaagatgaggaagccagccttcaaaaa
ggtctcaagttcaacctgattaacgatggggtcaacgacagccctagaatccacctgcct
ctaaactaccaacctggcagccctgacctagggcgtcactaccgctcaaattctcccctg
ccctccatccaacttcaaccccagtccccctctgcctccaagaaacaccaggctgtgcag
gacctcccagcgacaaacacctttgttgggacaggagacaacacctctacaggctctgac
cagtatttggattacagctacaaggccaaccctccaaaatatagcaacaaacagctgcct
catcgacgggtgacattctccacagccaatcaggcacaagacctgcaggacccctctcag
cacaactactatgacagtgggctagaggagtcagagacccccagcagtaagtcatcgtca
ggaccccgaattggacccctggcccttcccgaggatcactatgagcgcaccactcctgac
ggcagcattggtgagatggaacaccccgaaaacggtctcagacctctgccagacgtcgct
atgactggaaactgtactagggaatgcactgaatttggacattcagatgcctgttggatg
ccgggacaaccttcccctacccgcaagaccaagaatacccccaaactctctacctttgtg
ccttaccaagagagggataaccaggatcggctgaccaatgggagccccaggcttgtggag
gaacgtaacgccaaggtcgctaacatccgcttcctgcccccatacagtgccttctctagt
actagccatgagcccagcaaggactctcccatggaagaaatccctctcacccaggcctca
gagtttcaacaagccaccacccctactacccagaattccaagcgagagatctacctgtga
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integrated database retrieval system
