Polyodon spathula (Mississippi paddlefish): 121324052
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Entry
121324052 CDS
T07273
Name
(RefSeq) homeobox protein Nkx-2.5-like
KO
K09345
homeobox protein Nkx-2.5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121324052
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: NKL
121324052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
HTH_NDX
DUF7645
Motif
Other DBs
NCBI-GeneID:
121324052
NCBI-ProteinID:
XP_041121400
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Position
12:complement(32215515..32218380)
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AA seq
307 aa
AA seq
DB search
MFPSPMTSTPFSVKDILNLEQNQSEMTSLEVSSRLDSALSPSSCLLATFKQEPYTEIPSA
ASLFNEDFAQTKDTKNTCLNYADAFYGKNLLEMNVNKEAKLDTFEGNKKKAHKDTEDEEK
TEETDRPRQRKRRKPRVLFSQAQVYELERRFKQQKYLSAPERDHLASVLKLTATQVKIWF
QNRRYKCKRQRQDQTLEMVGIPPPRRIAVPLLVRDGKPCIADTAYSTSYNVGINHYTYNA
YPTFTNYTNPTCNTNYACNYPATAMQTMQSSPASNNYMNFGVGDLNNVPSQFQSGNGVST
LHGIRAW
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgttcccaagcccgatgacttcaactcccttttctgtgaaggatatattaaacctggag
caaaaccaaagtgaaatgacttcactggaagtatcatccaggctagactctgccttgtca
ccttcttcctgcctgctggcgacatttaaacaggagccgtacacagagatcccgtcggca
gcctctctgttcaatgaagatttcgctcagaccaaagacaccaaaaacacttgtctgaac
tacgccgatgccttttatggcaaaaatttattggaaatgaatgtcaacaaagaggcaaaa
ttggatacatttgagggaaacaagaaaaaagcacacaaagacaccgaggacgaggagaag
acagaagaaactgatcgcccaagacaaaggaaaaggagaaaacctcgagtgctcttctcg
caggcccaagtgtatgagctggagagaaggttcaaacagcagaaatatctttctgccccc
gagagggatcacctggccagcgtcctcaaactcaccgccactcaagtcaaaatctggttc
cagaacagaagatacaaatgcaaaagacaacggcaggatcaaacgctggaaatggttggg
atcccgcccccgaggcgcatcgcggtgcccttgctggtcagagatggcaaaccgtgcata
gcagacacagcttacagtacttcgtataacgttggcatcaaccattacacttataatgcc
taccctacattcaccaactacaccaacccaacctgcaacacaaactatgcatgtaactat
ccagccacagcgatgcaaaccatgcaatcgtcaccagccagcaataactacatgaacttt
ggtgttggcgacctcaataatgtaccgtctcaattccagtctggcaatggagtttctaca
ttacatggtatcagagcttggtag
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