Polyodon spathula (Mississippi paddlefish): 121324066
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Entry
121324066 CDS
T07273
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121324066 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pspa04054
]
121324066 (dhx58)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121324066 (dhx58)
Pattern recognition receptors [BR:
pspa04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
121324066 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_22
HydF_dimer
Motif
Other DBs
NCBI-GeneID:
121324066
NCBI-ProteinID:
XP_041121435
LinkDB
All DBs
Position
12:complement(45209533..45220303)
Genome browser
AA seq
681 aa
AA seq
DB search
MNLYKYQEEVIQPALEGRNIIIWLPTGGGKTRAAVYVAKKHLERRRAAKVAVLVNKIHLV
DQHYNKEFKPFLNGSHSIAHISGDSDQKEFFAKVVRDNDVIICTAQILENALKNTEEEKH
VELTDFSLLIIDECHHTHKDAVYNKIMERYVEKKLLREEGLPQVLGLTASPGTGGARNLE
AAKDHVLQICANLDASEITSAKVHLAELQENVPKPRKQYDVVHERLRDPFGDKVKELMGL
IHDYMDSPDVTTRFGCQEFEQEVVELEKLGADKGNRRLRQCALHLRQYNDALLVNDTVRM
IDAFNVLDTFNTNERATRGGLDDTDRFLFRVFQENRLELQRLANTTEFENPKLAKLEDIL
LDQFQNSQKSRGILFTKTRTSTHCLNDWIRTNVKLRKAGIKPSSLTGAGFSNQAGHMTQR
QQQETIQKFREGELNLLISTSVAEEGLDIPQCNLVVRYGLLTNDIATKQAQGRARAVDSV
YSVVAQSGGRELRREYTNEYLEELTEKAIDEVQRMAKRDYQLKIRDLQKEAVITRRLSQE
KAEEKRNTHDPSGVILHCRRCNNAVCHGSDLQVIEGTHHVNINPFFEVYYKLGGKVCLGK
KFEDWEPGHTISCKDCGQEWGMEMIYKAVTMPMLAIKNFVIATPKGRYSCKQWKGVTFRI
DEFDYIAYCERKFEDLLPHLD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgtacaaataccaggaagaggtgatccagcctgctttggaaggcaggaacatc
attatctggctccctactggcgggggaaagaccagggccgctgtgtatgtggcaaagaaa
catctggaaagaagacgtgcggccaaggtagctgtgctggtaaataagattcacctagtg
gaccagcactacaacaaggagttcaagccctttctgaacggctcccacagcattgcccac
atcagcggggacagcgaccagaaggagttctttgctaaggtcgtgcgtgacaatgacgtc
atcatctgcacagcgcagatcttggagaacgccctgaaaaacacagaggaggagaagcac
gtggaactcacagacttcagcctcctgataatcgacgagtgccaccacacccacaaggac
gccgtgtacaacaagatcatggagcgctatgtggagaagaagctgcttcgagaggaaggg
ctaccacaagtgctgggcctgactgcatctccagggaccggaggggccaggaacctggaa
gcagccaaggaccatgtgctgcagatctgtgccaaccttgatgccagcgaaatcacgtct
gccaaagtacacttagctgagctgcaagagaatgtgcctaaacccaggaagcagtatgat
gttgttcacgagagactgcgggacccctttggagacaaagtaaaggagctcatggggctg
atccacgactacatggactcgcctgatgtcaccacacgcttcggctgtcaggaattcgag
caggaagtagtggagctggaaaaattaggtgctgacaaggggaaccgacggctgcgtcag
tgcgccctgcacctccgccagtacaacgacgcgctgctggtcaacgacacggtgcgcatg
atcgacgccttcaacgtcctggacactttcaacaccaacgagagagcgacgcggggaggc
ctggatgacactgaccgcttcctcttcagagtctttcaggaaaacagattggagttgcag
cggctggcaaacaccacagagtttgagaaccccaagctggcgaagctggaagacatccta
ctggatcagttccagaactcccaaaagtcccgcgggatcctgttcaccaagacccgcacg
agcacccactgcctgaacgactggatcagaaccaatgtaaagctgagaaaggccgggatc
aaaccatcctccttgactggggcgggcttcagcaaccaggccggccacatgacccagagg
cagcagcaggagaccattcagaagttcagggaaggagagctgaacctcctgatttccacg
agcgttgcagaggaagggctggacatcccacagtgcaatctggtggtgcgctatggcctg
ctcaccaacgacatcgccaccaagcaggcgcaaggcagggcgcgtgctgtagacagcgtg
tactcggtggtagcgcagagcggcgggagggagctgaggcgtgagtacacgaatgagtat
ctggaggagctcactgagaaagccatcgatgaggtgcagcgcatggcaaagagggactac
cagctgaagatccgagacctgcagaaggaagccgtcatcacccggaggctgtcccaggag
aaggcggaggagaagaggaacacccacgacccctcgggcgtgattttgcactgcaggcgc
tgcaacaacgctgtgtgccacgggagtgacctgcaagttatcgagggcactcaccatgtc
aacatcaaccccttctttgaggtttactacaaattaggtggaaaagtttgccttggaaag
aaatttgaggactgggaacctgggcacacaataagctgcaaagactgtggtcaggaatgg
gggatggagatgatctacaaggccgtgaccatgcccatgctcgccattaaaaactttgtg
atcgcaacacccaagggcagatactcctgcaagcaatggaaaggagtcaccttccgaatc
gatgaattcgactacattgcttactgcgagaggaagtttgaagatctattgccgcacctt
gactga
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